BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0642900 Os03g0642900|Os03g0642900
         (240 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0642900  Conserved hypothetical protein                      461   e-130
Os03g0643250  Conserved hypothetical protein                      378   e-105
Os12g0615500  Conserved hypothetical protein                      331   2e-91
Os03g0643000                                                      154   7e-38
Os09g0363800  Beta-lactamase-like domain containing protein       104   6e-23

>Os03g0642900 Conserved hypothetical protein
          Length = 240

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 19  VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH 78
           VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH
Sbjct: 19  VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH 78

Query: 79  EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR 138
           EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR
Sbjct: 79  EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR 138

Query: 139 VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL 198
           VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL
Sbjct: 139 VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL 198

Query: 199 PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYGCLDYC 240
           PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYGCLDYC
Sbjct: 199 PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYGCLDYC 240



>Os03g0643250 Conserved hypothetical protein
          Length = 553

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/217 (82%), Positives = 194/217 (89%)

Query: 19  VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH 78
           VIFLGTGCSGALPD RCL+ PS PPC VCS  +SLPPE+NPNYRCNTSLLIDYCQ DG H
Sbjct: 7   VIFLGTGCSGALPDARCLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66

Query: 79  EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR 138
           +YI+IDVGKTFREQVLRWF HHKIP+V+SIILTHEHADAVLGLDDVW+VQP GC N   +
Sbjct: 67  KYILIDVGKTFREQVLRWFSHHKIPYVDSIILTHEHADAVLGLDDVWVVQPSGCRNGLGK 126

Query: 139 VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL 198
           VPIFLT FTM+SV ARFPYLLKNKLEEGDE SQV QLDW IIEGDIDKPFVSSGLEFVPL
Sbjct: 127 VPIFLTHFTMNSVAARFPYLLKNKLEEGDEGSQVIQLDWTIIEGDIDKPFVSSGLEFVPL 186

Query: 199 PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYG 235
           PVMHGE  +CLGFLFGR+++IAYLSDVSR LP TE+G
Sbjct: 187 PVMHGEDYVCLGFLFGRRSRIAYLSDVSRILPRTEHG 223



>Os12g0615500 Conserved hypothetical protein
          Length = 284

 Score =  331 bits (849), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 186/221 (84%)

Query: 19  VIFLGTGCSGALPDTRCLLRPSAPPCAVCSLGVSLPPEQNPNYRCNTSLLIDYCQDDGTH 78
           ++FLGTGCS A+P+ RCL++P  PPCAVCS  +S+ PE NPNYRCNTSLLIDYCQD+  H
Sbjct: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAH 91

Query: 79  EYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDVWMVQPKGCSNDFRR 138
           +YI+IDVGKTFREQVLRWFVHHKIP V+SIILTHEHADA+LGLDDV +VQ    +ND   
Sbjct: 92  KYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEP 151

Query: 139 VPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPL 198
            PI+L+QF MDS+  +FPYL++ KL+EG+EV +VAQLDWR+IE D+  PFV+SGLEFVPL
Sbjct: 152 TPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPL 211

Query: 199 PVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPETEYGCLDY 239
           PV+HGE  ICLGFLFGRK+K+AY+SDVS F P TE+G + Y
Sbjct: 212 PVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGHILY 252



>Os03g0643000 
          Length = 153

 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/84 (83%), Positives = 79/84 (94%)

Query: 152 VARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKPFVSSGLEFVPLPVMHGEGNICLGF 211
           +ARFPYL+K KLEEGDE SQVAQLDWRIIEGDI+KPF+SSGLEFVPLPVMHGEG +CLGF
Sbjct: 4   IARFPYLVKYKLEEGDEASQVAQLDWRIIEGDIEKPFISSGLEFVPLPVMHGEGYVCLGF 63

Query: 212 LFGRKAKIAYLSDVSRFLPETEYG 235
           LFGRKA+IAYLSD+ RFLP+TE+ 
Sbjct: 64  LFGRKARIAYLSDILRFLPKTEHA 87



>Os09g0363800 Beta-lactamase-like domain containing protein
          Length = 377

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 30/224 (13%)

Query: 19  VIFLGTGCSGALPDTRCLLRPSA-----PPCAVCSLGVSLPPEQ--NPNYRCNTSLLIDY 71
           +IFLGTG S  +P   CL  PS      PP ++    V     +  N N R NTS+L+ +
Sbjct: 99  LIFLGTGTSEGIPRVSCLTNPSKTCTVRPPSSLQQRDVCTKAAEPGNRNRRRNTSILLRH 158

Query: 72  CQDDGTHEYIIIDVGKTFREQVLRWFVHHKIPWVNSIILTHEHADAVLGLDDV--WM--V 127
               GT   I+ID GK F    L+WF  + +  ++++I+TH HADA+ GLD +  W   V
Sbjct: 159 ATPSGTAN-ILIDAGKFFYHSALQWFPAYGLRTIDAVIITHSHADAIGGLDCLRDWTNNV 217

Query: 128 QPKGCSNDFRRVPIFLTQFTMDSVVARFPYLLKNKLEEGDEVSQVAQLDWRIIEGDIDKP 187
           QP         +PI++ +   + +     YL+   +      + V+ L + II+   ++P
Sbjct: 218 QPT--------IPIYVAERDYEVMKMTHYYLIDTSVVIPG--AAVSALQFNIIK---EEP 264

Query: 188 FVSSGLEFVPLPVMHGEGNICLGFLFGRKAKIAYLSDVSRFLPE 231
           F    LE +PLPV HG+G   LGF FGR      L +V +  P+
Sbjct: 265 FTVHNLEVIPLPVWHGQGYRSLGFRFGRA-----LEEVRKIKPK 303



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,730,167
Number of extensions: 382318
Number of successful extensions: 1270
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 154 (63.9 bits)