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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0615500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0159) R2 : 0.0411
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0335) R2dN8 : 0.053 R2N8 : 0.0411
σ : 0.3
deviance : 41.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.4 0.207 10.8 -0.603 0.312 -0.994 -0.675 0.144 0.0479 14.1 19.92 135 -- --
19.38 0.205 10.8 -0.606 0.317 -1.08 -0.676 -- 0.0503 14.1 19.73 164 -- --
20.95 0.213 10.8 -0.638 0.314 -0.691 -- 0.899 0.0355 13.9 20.43 133 -- --
21.06 0.214 10.8 -0.631 0.321 -1.14 -- -- 0.0452 13.8 19.66 187 -- --
26.01 0.238 10.8 -0.685 -- -0.814 -- 0.707 -0.00256 -- 21.89 84 -- --
25.55 0.237 10.8 -0.429 0.359 -- -0.78 -- 0.109 14.1 -- -- -- --
27.83 0.247 10.8 -0.452 0.357 -- -- -- 0.105 13.9 -- -- -- --
26.33 0.239 10.8 -0.656 -- -1.07 -- -- 0.0113 -- 21.02 124 -- --
30.4 0.257 10.8 -- 0.334 -0.728 -- -- 0.12 13.7 19.48 121 -- --
35.53 0.279 10.8 -0.467 -- -- -- -- 0.0964 -- -- -- -- --
33.22 0.27 10.8 -- 0.365 -- -- -- 0.155 13.9 -- -- -- --
36.27 0.281 10.8 -- -- -0.655 -- -- 0.0964 -- 21.84 57 -- --
41.28 0.3 10.8 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.78 humidity 80.0 1440 > th dose dependent rect. 9 3
3 19.00 humidity 70.0 1440 > th dose dependent rect. 10 1
8 19.22 humidity 60.0 43200 < th dose dependent rect. 19 12
10 19.26 humidity 80.0 720 > th dose dependent rect. 8 9
13 19.30 humidity 90.0 1440 < th dose independent rect. 9 4
14 19.33 humidity 90.0 1440 < th dose independent rect. 9 2
17 19.36 temperature 20.0 90 < th dose dependent sin 7 NA
19 19.38 humidity 90.0 720 < th dose independent rect. 9 9
20 19.39 humidity 50.0 43200 > th dose independent rect. 20 11
21 19.40 temperature 20.0 1440 < th dose dependent rect. 11 1
24 19.40 temperature 20.0 90 < th dose dependent rect. 16 20
35 19.44 humidity 90.0 1440 > th dose independent rect. 10 3
50 19.48 temperature 20.0 270 < th dose dependent rect. 9 22
53 19.49 precipitation 0.1 1440 > th dose independent rect. 8 5
55 19.49 precipitation 0.1 1440 > th dose dependent rect. 8 5
60 19.50 temperature 20.0 90 < th dose dependent rect. 19 23
61 19.51 humidity 90.0 1440 > th dose independent rect. 9 5
64 19.52 temperature 20.0 90 < th dose dependent no NA NA
71 19.53 humidity 50.0 43200 < th dose independent rect. 20 10
74 19.54 humidity 50.0 43200 < th dose independent rect. 21 8
83 19.55 temperature 20.0 90 < th dose dependent rect. 23 23
85 19.56 temperature 20.0 90 < th dose dependent rect. 19 17
87 19.56 temperature 20.0 90 < th dose dependent rect. 1 23
89 19.57 radiation 1.0 1440 < th dose independent rect. 10 1
92 19.57 precipitation 0.1 1440 < th dose independent rect. 9 4
94 19.57 radiation 1.0 1440 < th dose dependent rect. 10 1
97 19.57 precipitation 0.1 1440 < th dose dependent rect. 9 4
98 19.57 radiation 1.0 1440 < th dose dependent rect. 9 7
114 19.58 temperature 15.0 4320 < th dose dependent rect. 5 9
129 19.59 temperature 20.0 90 < th dose dependent rect. 3 23
146 19.62 humidity 90.0 1440 > th dose independent rect. 8 9
176 19.65 radiation 1.0 1440 > th dose independent rect. 10 1
187 19.66 humidity 90.0 720 > th dose independent rect. 8 11
212 19.68 radiation 20.0 4320 < th dose independent rect. 21 9
232 19.69 temperature 20.0 90 < th dose dependent rect. 23 20
247 19.71 radiation 1.0 720 < th dose independent rect. 9 6
265 19.72 temperature 15.0 4320 < th dose dependent rect. 6 5
286 19.74 humidity 50.0 43200 < th dose dependent rect. 8 1
291 19.74 temperature 20.0 90 < th dose dependent rect. 23 13
299 19.75 humidity 80.0 720 > th dose dependent sin 0 NA
313 19.76 radiation 1.0 4320 < th dose independent rect. 8 1
315 19.76 radiation 1.0 4320 < th dose dependent rect. 8 1
333 19.77 humidity 80.0 720 > th dose dependent rect. 5 13
337 19.78 humidity 50.0 43200 > th dose independent rect. 19 2
370 19.80 humidity 60.0 43200 < th dose dependent rect. 19 2
383 19.81 radiation 30.0 4320 < th dose independent rect. 6 1
419 19.84 temperature 15.0 4320 < th dose dependent sin 1 NA
448 19.88 humidity 60.0 43200 > th dose independent rect. 23 3
468 19.89 humidity 50.0 43200 > th dose independent rect. 19 6
489 19.90 humidity 90.0 720 < th dose independent sin 23 NA
490 19.90 humidity 60.0 43200 > th dose independent rect. 24 1
492 19.90 humidity 50.0 43200 < th dose independent rect. 4 5
500 19.90 humidity 50.0 43200 > th dose independent rect. 24 9
548 19.92 humidity 50.0 43200 < th dose independent rect. 19 2
550 19.92 radiation 20.0 4320 < th dose independent rect. 23 7
570 19.93 humidity 50.0 43200 > th dose independent rect. 4 5
604 19.95 humidity 50.0 43200 > th dose independent rect. 6 2
653 19.97 humidity 50.0 43200 < th dose independent rect. 5 3
712 20.00 temperature 10.0 43200 > th dose independent rect. 13 15
725 20.01 temperature 10.0 43200 > th dose independent rect. 24 3
749 20.02 temperature 10.0 43200 > th dose independent rect. 20 8
751 20.02 temperature 10.0 43200 > th dose independent rect. 11 17
752 20.02 temperature 10.0 43200 < th dose independent rect. 9 19
766 20.03 radiation 10.0 4320 > th dose independent rect. 5 1
773 20.03 temperature 10.0 43200 < th dose independent rect. 22 6
784 20.03 temperature 10.0 43200 > th dose independent rect. 17 11
800 20.03 temperature 10.0 43200 > th dose independent rect. 9 19
824 20.04 temperature 10.0 43200 > th dose independent rect. 22 6
832 20.04 temperature 10.0 43200 > th dose independent rect. 13 18
834 20.04 radiation 10.0 4320 > th dose dependent rect. 5 1
835 20.04 humidity 90.0 1440 < th dose dependent rect. 10 2
861 20.05 temperature 10.0 43200 > th dose independent sin 13 NA
883 20.05 temperature 10.0 43200 > th dose independent rect. 11 20
884 20.05 temperature 10.0 43200 > th dose independent rect. 9 22
887 20.05 temperature 15.0 4320 < th dose dependent rect. 23 13
920 20.06 temperature 10.0 43200 < th dose dependent rect. 1 2
933 20.06 temperature 15.0 4320 < th dose dependent rect. 23 15
942 20.07 temperature 10.0 43200 < th dose independent sin 12 NA
972 20.07 temperature 10.0 43200 > th dose independent rect. 2 23
973 20.07 temperature 10.0 43200 > th dose independent rect. 6 23
997 20.08 temperature 10.0 43200 < th dose independent sin 10 NA
1000 20.08 temperature 10.0 43200 < th dose independent no NA NA