BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0615500 Os12g0615500|AK100235
         (284 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30300.1  | chr1:10673084-10675061 FORWARD LENGTH=325          364   e-101
AT4G03610.1  | chr4:1605039-1606917 FORWARD LENGTH=304            272   1e-73
AT3G13800.1  | chr3:4538879-4541366 FORWARD LENGTH=362            131   4e-31

>AT1G30300.1 | chr1:10673084-10675061 FORWARD LENGTH=325
          Length = 324

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 201/250 (80%), Gaps = 14/250 (5%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAH 91
           L+FLGTGCSSAVPNA CLIQ  D PC VCSQSLS+ PE NPNYR NTSLLIDYCQ +  H
Sbjct: 22  LIFLGTGCSSAVPNAMCLIQRSDNPCYVCSQSLSIPPEKNPNYRGNTSLLIDYCQSDGKH 81

Query: 92  KYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEP 151
           KYI IDVGKTFREQVLRWF  HKIP VDSIILTHEHADA+LGLDD+R VQ FSPTNDI+P
Sbjct: 82  KYIQIDVGKTFREQVLRWFTLHKIPQVDSIILTHEHADAVLGLDDIRSVQPFSPTNDIDP 141

Query: 152 TPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPL 211
           TPI++SQ+AM+S+A KFPYLV+KKLKEG+EVRRVAQLDWRVIE D + PFV SGL F PL
Sbjct: 142 TPIFVSQYAMESLAVKFPYLVQKKLKEGQEVRRVAQLDWRVIEEDCEKPFVASGLSFTPL 201

Query: 212 PVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGHILYSFCIGCNARMLVLIGNSPL 271
           PV+HGEDY+CLGFLFG KS+VAYISDVS FPP+TE+               +   G   L
Sbjct: 202 PVMHGEDYVCLGFLFGEKSRVAYISDVSRFPPNTEYA--------------ISKSGGGQL 247

Query: 272 DGLVLTTMHR 281
           D L+L T+++
Sbjct: 248 DLLILDTLYK 257



>AT4G03610.1 | chr4:1605039-1606917 FORWARD LENGTH=304
          Length = 303

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/220 (63%), Positives = 163/220 (74%), Gaps = 20/220 (9%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYC--QDEN 89
           L+FLGTGCS AVP+ RCL+QP DPPC VCSQSLS+ P LNPNYRCNTSLLIDYC  +++ 
Sbjct: 13  LIFLGTGCSGAVPDFRCLLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDG 72

Query: 90  AHKYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPT-ND 148
            HKYILIDVGK+FREQ               IILTHEHADA+ GLD++R +Q    T  D
Sbjct: 73  RHKYILIDVGKSFREQ---------------IILTHEHADAVHGLDEIRSLQPRGATIVD 117

Query: 149 IEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEF 208
            +P P++LSQF M+SIA +FPYLV KK+KE    RRV+ LDW+ IE +   PF  SGL F
Sbjct: 118 TDPLPVFLSQFTMESIATRFPYLVEKKVKEVP--RRVSLLDWKNIEENCDEPFAASGLSF 175

Query: 209 VPLPVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHG 248
            PLPV+HGEDYI LGFLFG KSKVAYISDVS  PPSTE+ 
Sbjct: 176 TPLPVMHGEDYIALGFLFGDKSKVAYISDVSRIPPSTEYA 215



>AT3G13800.1 | chr3:4538879-4541366 FORWARD LENGTH=362
          Length = 361

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 18/215 (8%)

Query: 32  LVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAH 91
           +VF+GTG S  +P   CL  P    C+VC+++       N N R NTS+L+ Y +     
Sbjct: 80  IVFMGTGTSEGIPRVSCLTNPLKT-CSVCTKATEPG---NRNRRLNTSILVRYIRPSGTS 135

Query: 92  KYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEP 151
             ILID GK F    LRWF    +  +D++++TH HADAI GLDD+R       TN+++P
Sbjct: 136 N-ILIDCGKFFYHSALRWFPTFGLRTLDAVVITHSHADAIGGLDDLR-----DWTNNVQP 189

Query: 152 -TPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVP 210
             PIY +   ++ + +   YLV   +        V++L+++VI  D   PFV + L+  P
Sbjct: 190 HIPIYTAIRDLEVMKKTHYYLVDTSVIIPGAA--VSELEFKVIHEDQ--PFVVNDLKITP 245

Query: 211 LPVIHGEDYICLGFLFGRKSKVAYISDVSWFPPST 245
           LPV HG +Y  LGF FG    V YISDVS  P  T
Sbjct: 246 LPVWHGSNYRSLGFRFG---NVCYISDVSDIPEET 277



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,174,817
Number of extensions: 263780
Number of successful extensions: 729
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 111 (47.4 bits)