BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0601000 Os12g0601000|Os12g0601000
(564 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0601000 Conserved hypothetical protein 905 0.0
Os03g0633400 Cyclin-like F-box domain containing protein 632 0.0
>Os12g0601000 Conserved hypothetical protein
Length = 564
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/548 (83%), Positives = 459/548 (83%)
Query: 17 VGKKRGSYNCGRCGLPKKGHVCAVAGEEQKPPRRALHFDXXXXXXXXXXXXXXXXXXXXX 76
VGKKRGSYNCGRCGLPKKGHVCAVAGEEQKPPRRALHFD
Sbjct: 17 VGKKRGSYNCGRCGLPKKGHVCAVAGEEQKPPRRALHFDEAAPPPPPEKKVKVEVVEVDS 76
Query: 77 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRRLPPRGVAASAAVCRGWRGCARRVWRAA 136
MRRLPPRGVAASAAVCRGWRGCARRVWRAA
Sbjct: 77 SSSEEEEREARGWVEVGGGRRVPGEVVVEVMRRLPPRGVAASAAVCRGWRGCARRVWRAA 136
Query: 137 DELRLRAAGVRPVGALLPRCPALSRLVLRMESDIDATMLACVAFSCPNLQYLEISMVGSA 196
DELRLRAAGVRPVGALLPRCPALSRLVLRMESDIDATMLACVAFSCPNLQYLEISMVGSA
Sbjct: 137 DELRLRAAGVRPVGALLPRCPALSRLVLRMESDIDATMLACVAFSCPNLQYLEISMVGSA 196
Query: 197 ANRMTGDELTRFVSEKRSLSVLKLDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXVINCPN 256
ANRMTGDELTRFVSEKRSLSVLKLDGC VINCPN
Sbjct: 197 ANRMTGDELTRFVSEKRSLSVLKLDGCSNLNFLNISSSSLSTLWLSDLSSLSKSVINCPN 256
Query: 257 LNELSLGFTQQNNDSTDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCM 316
LNELSLGFTQQNNDSTDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCM
Sbjct: 257 LNELSLGFTQQNNDSTDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCM 316
Query: 317 LSLILGSKITDAAVASIVRSYAXXXXXXXXXXXITDNGLGMICKAFPHTLTRLLLALCPN 376
LSLILGSKITDAAVASIVRSYA ITDNGLGMICKAFPHTLTRLLLALCPN
Sbjct: 317 LSLILGSKITDAAVASIVRSYASLDLLDLSGSSITDNGLGMICKAFPHTLTRLLLALCPN 376
Query: 377 ITSCGVQVATSQLPLLQLMDCGKSLCANSQPEAERSYFGEIYGGIKFCSKLPIQRKQQPN 436
ITSCGVQVATSQLPLLQLMDCGKSLCANSQPEAERSYFGEIYGGIKFCSKLPIQRKQQPN
Sbjct: 377 ITSCGVQVATSQLPLLQLMDCGKSLCANSQPEAERSYFGEIYGGIKFCSKLPIQRKQQPN 436
Query: 437 YQKLIIKHANLKKLSLWGCSALDALYVNCPELSDLNLNCCTNLHPERLLLQCPSLKDVHA 496
YQKLIIKHANLKKLSLWGCSALDALYVNCPELSDLNLNCCTNLHPERLLLQCPSLKDVHA
Sbjct: 437 YQKLIIKHANLKKLSLWGCSALDALYVNCPELSDLNLNCCTNLHPERLLLQCPSLKDVHA 496
Query: 497 SGCRDMLIGAIRNQVLNEFASAEPRVPCKRLADGSKRVQVPHFMLEQQFEEEKWGSGSKR 556
SGCRDMLIGAIRNQVLNEFASAEPRVPCKRLADGSKRVQVPHFMLEQQFEEEKWGSGSKR
Sbjct: 497 SGCRDMLIGAIRNQVLNEFASAEPRVPCKRLADGSKRVQVPHFMLEQQFEEEKWGSGSKR 556
Query: 557 SQCTVHLS 564
SQCTVHLS
Sbjct: 557 SQCTVHLS 564
>Os03g0633400 Cyclin-like F-box domain containing protein
Length = 600
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/457 (69%), Positives = 366/457 (80%), Gaps = 2/457 (0%)
Query: 107 MRRLPPRGVAASAAVCRGWRGCARRVWRAADELRLRAAGVRPVGALLPRCPALSRLVLRM 166
+RRL PRGV A+AAV RGWR CA RVWRAA+ELRLRAAGV VGALLPRCPALSRL LRM
Sbjct: 145 LRRLGPRGVMAAAAVSRGWRDCAGRVWRAAEELRLRAAGVSLVGALLPRCPALSRLSLRM 204
Query: 167 ESDIDATMLACVAFSCPNLQYLEISMVGSAANRMTGDELTRFVSEKRSLSVLKLDGCXXX 226
ESD+DAT+LAC+AFSCP+L LEISM +A NRMTG+EL+RFVSEK SLSVLK+ GC
Sbjct: 205 ESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTGEELSRFVSEKHSLSVLKIGGCCNL 264
Query: 227 XXXXXXXXXXXXXXXXXXXXXXXXVINCPNLNELSLGFTQQNNDSTDLISLMDSLGRTCS 286
VINCPN++E+SL FTQQ+ND TDL++LMD LGRTC
Sbjct: 265 GFLNLNSSSLSILWLSDLCSLSKSVINCPNMSEISLCFTQQSNDCTDLVTLMDGLGRTCP 324
Query: 287 NLRNLHISSIHLCNEAVFSLESANLRGLCMLSLILGSKITDAAVASIVRSYAXXXXXXXX 346
NL+N+HISS L NEAVF+LE A+LRGLCMLSLILGSKITDAAVASIVRS A
Sbjct: 325 NLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILGSKITDAAVASIVRSCASLELLDLS 384
Query: 347 XXXITDNGLGMICKAFPHTLTRLLLALCPNITSCGVQVATSQLPLLQLMDCGKSLCANSQ 406
I+DNG+GMICKAFPHTL+RLLLALCPN+T+CG+Q AT+QLPLLQLMDCG +LCA+ Q
Sbjct: 385 GSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGIQFATAQLPLLQLMDCGMTLCASLQ 444
Query: 407 PEAERSYFGEIYGGIKFCSKLPIQRKQQPNYQKLIIKHANLKKLSLWGCSALDALYVNCP 466
E + YFGEI G I+FC KLP +KQ N QKLIIKH NLKKLSLWGCSA+DALY+NCP
Sbjct: 445 NEKQGPYFGEINGAIRFCPKLPTSKKQSTN-QKLIIKHGNLKKLSLWGCSAIDALYLNCP 503
Query: 467 ELSDLNLNCCTNLHPERLLLQCPSLKDVHASGCRDMLIGAIRNQVLNEFASAEPRVPCKR 526
EL+DLNLN CTNL+PERLLLQCP LK+VHASGC DMLIGAIRNQVLNEFA+AEP +PCKR
Sbjct: 504 ELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDMLIGAIRNQVLNEFAAAEPHLPCKR 563
Query: 527 LADGSKRVQVPHFMLEQQFEEEKWGSGSKRSQCTVHL 563
LADGSKRVQ+P F +Q+ ++K G +R+QCTVHL
Sbjct: 564 LADGSKRVQLPQFA-QQEPSQDKKGIDLRRNQCTVHL 599
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,515,706
Number of extensions: 548426
Number of successful extensions: 1961
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1952
Number of HSP's successfully gapped: 3
Length of query: 564
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 458
Effective length of database: 11,501,117
Effective search space: 5267511586
Effective search space used: 5267511586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)