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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0601000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0611) R2 : -0.603
β1 : 0.675 (0.225) R2dD : 0.0295 R2D : -0.0186
β2 : 0.124 (0.144) R2dC : 0.00129 R2C : -0.0167
β3 : 15.4 (0.937) R2dE : 1.86 R2E : -2.21
β4 : -0.541 (0.559) R2dD*C : 0.0046 R2D*C : -0.0174
β5 : 30.5 (2.31) R2dD*E : 1.5 R2D*E : -2.41
γ1 : -0.146 (0.13) R2dN8 : 0.00209 R2N8 : 0.00117
σ : 0.831
deviance : 313.1
__
_____
C
peak time of C : 13.2
E
wheather : radiation
threshold : 1.068
memory length : 62
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6
open length of G : 0.974

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.1 0.831 3.19 0.675 0.124 15.4 -0.541 30.5 -0.146 13.2 1.068 62 6 0.974
358.13 0.881 3.12 0.261 0.0497 1.1 -0.704 -- -0.208 6.07 0.7178 17 7.85 0.729
360.05 0.884 3.12 0.31 0.101 10.6 -- 34.2 -0.166 11.4 1.556 62 9.26 1.22
355.69 0.878 3.12 0.276 0.0964 1.52 -- -- -0.199 8.07 5.989 90 7.86 0.766
360.57 0.884 3.15 0.327 -- 10.8 -- 33.7 -0.206 -- 1.41 63 10.3 1.25
357.42 0.886 3.12 0.287 0.118 -- -0.881 -- -0.206 8.52 -- -- -- --
359.79 0.888 3.12 0.261 0.125 -- -- -- -0.204 10 -- -- -- --
355.71 0.878 3.12 0.277 -- 1.35 -- -- -0.189 -- 6.02 91 7.89 0.717
357.41 0.881 3.12 -- 0.0792 1.35 -- -- -0.205 9.89 5.871 91 7.87 0.767
360.73 0.887 3.12 0.26 -- -- -- -- -0.204 -- -- -- -- --
361.58 0.89 3.12 -- 0.124 -- -- -- -0.233 9.85 -- -- -- --
352 0.874 3.12 -- -- 2.51 -- -- -0.205 -- 2.674 89 8 0.55
362.5 0.889 3.13 -- -- -- -- -- -0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.24 radiation 1.0 10 < th dose dependent rect. 6 1
3 317.51 radiation 1.0 10 < th dose independent rect. 6 1
5 319.37 radiation 1.0 10 < th dose independent rect. 5 3
13 321.86 radiation 1.0 10 < th dose dependent rect. 5 3
55 332.18 wind 7.0 720 < th dose independent rect. 1 8
56 333.05 radiation 1.0 90 > th dose independent rect. 4 1
66 333.05 radiation 1.0 90 > th dose dependent rect. 4 1
77 333.97 wind 7.0 270 > th dose dependent rect. 4 5
86 335.74 wind 7.0 270 > th dose dependent rect. 2 8
88 335.98 temperature 25.0 30 > th dose independent rect. 9 1
91 336.38 wind 1.0 30 > th dose dependent rect. 5 1
95 336.81 precipitation 0.1 270 > th dose independent rect. 5 2
96 336.81 precipitation 0.1 270 > th dose dependent rect. 5 2
100 337.11 wind 3.0 90 > th dose independent rect. 5 2
104 337.18 temperature 20.0 90 < th dose independent rect. 4 1
107 337.37 wind 5.0 720 < th dose independent rect. 21 7
108 337.40 wind 3.0 270 > th dose dependent rect. 5 1
111 337.46 radiation 10.0 43200 < th dose dependent rect. 1 1
113 337.55 temperature 25.0 10 > th dose dependent rect. 9 1
117 338.15 wind 3.0 10 > th dose independent rect. 5 2
120 338.39 wind 7.0 270 > th dose dependent rect. 24 10
122 338.42 wind 5.0 720 > th dose independent rect. 24 1
125 338.56 wind 5.0 720 > th dose independent rect. 23 7
132 338.77 wind 5.0 720 > th dose dependent rect. 24 6
142 338.98 humidity 80.0 10 > th dose independent rect. 5 1
160 339.27 temperature 25.0 10 < th dose independent rect. 6 1
168 339.40 wind 7.0 270 > th dose independent rect. 4 4
169 339.41 wind 5.0 720 > th dose independent rect. 20 10
178 339.55 radiation 1.0 30 < th dose independent rect. 5 20
194 339.86 wind 5.0 720 > th dose dependent rect. 1 2
197 339.88 wind 5.0 720 < th dose independent rect. 23 9
231 340.19 wind 5.0 720 < th dose independent rect. 21 12
243 340.40 wind 1.0 14400 > th dose independent rect. 10 1
250 340.48 precipitation 0.1 10 > th dose independent rect. 5 13
252 340.48 precipitation 0.1 10 > th dose dependent rect. 5 13
257 340.50 wind 3.0 14400 < th dose dependent rect. 10 1
297 340.90 wind 1.0 10 < th dose dependent rect. 6 1
356 341.23 wind 1.0 14400 < th dose independent rect. 10 1
360 341.24 atmosphere 1000.0 30 > th dose independent rect. 6 23
384 341.43 humidity 70.0 10 > th dose dependent rect. 5 1
391 341.51 precipitation 0.1 10 > th dose independent rect. 5 19
398 341.51 precipitation 0.1 10 > th dose dependent rect. 5 19
400 341.53 wind 7.0 1440 < th dose independent rect. 6 1
402 341.53 temperature 10.0 1440 > th dose independent rect. 6 1
405 341.53 temperature 30.0 1440 < th dose independent rect. 6 1
409 341.53 humidity 50.0 1440 > th dose independent rect. 6 1
414 341.53 atmosphere 995.0 1440 > th dose independent rect. 6 1
415 341.53 atmosphere 1015.0 1440 < th dose independent rect. 6 1
416 341.53 radiation 40.0 1440 < th dose independent rect. 6 1
420 341.53 temperature 10.0 1440 > th dose independent rect. 7 23
437 341.61 humidity 80.0 720 < th dose independent rect. 22 1
441 341.62 atmosphere 1005.0 43200 < th dose dependent rect. 11 1
528 342.00 atmosphere 1005.0 43200 < th dose dependent rect. 22 1
533 342.01 atmosphere 1005.0 43200 < th dose dependent rect. 20 1
534 342.01 radiation 1.0 43200 < th dose dependent rect. 19 7
546 342.04 wind 9.0 270 > th dose independent rect. 9 1
556 342.04 atmosphere 1005.0 43200 < th dose dependent rect. 20 3
575 342.07 radiation 1.0 30 < th dose dependent rect. 5 20
607 342.14 atmosphere 1005.0 43200 < th dose dependent rect. 20 17
617 342.16 wind 5.0 720 < th dose independent sin 10 NA
618 342.16 atmosphere 1005.0 43200 < th dose dependent sin 2 NA
647 342.18 atmosphere 1005.0 43200 < th dose dependent rect. 7 17
698 342.22 atmosphere 1000.0 43200 < th dose dependent rect. 5 1
700 342.22 radiation 1.0 43200 < th dose dependent rect. 21 5
711 342.23 wind 9.0 43200 > th dose dependent rect. 19 2
748 342.25 wind 7.0 14400 > th dose independent rect. 8 1
749 342.25 precipitation 0.1 90 > th dose independent rect. 4 13
784 342.27 wind 5.0 720 > th dose independent sin 9 NA
785 342.27 temperature 30.0 720 < th dose independent rect. 15 3
815 342.28 wind 5.0 720 > th dose dependent rect. 20 13
844 342.30 atmosphere 1005.0 43200 < th dose dependent no NA NA
882 342.31 atmosphere 1005.0 43200 < th dose dependent rect. 22 23
906 342.33 wind 7.0 270 > th dose dependent rect. 7 1
985 342.37 atmosphere 1005.0 43200 < th dose dependent rect. 19 11