BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0597400 Os12g0597400|AK071949
         (497 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0597400  HI0933-like protein family protein                  789   0.0  
Os03g0784000  FAD dependent oxidoreductase family protein          90   4e-18

>Os12g0597400 HI0933-like protein family protein
          Length = 497

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/434 (89%), Positives = 387/434 (89%)

Query: 64  FSRQSAIKKSFHQEQVVFSTPVPPDPSXXXXXXXXXXXXXXXXXXXXXXXXXXFDTGMHG 123
           FSRQSAIKKSFHQEQVVFSTPVPPDPS                          FDTGMHG
Sbjct: 64  FSRQSAIKKSFHQEQVVFSTPVPPDPSVAVVGGGASGLACAASLAARGVRAVVFDTGMHG 123

Query: 124 LGGRMATRXXXXXXXXXXXXXXXXXXXXXFFTASDERFKRVVDEWMDKGLVREWGGLIGE 183
           LGGRMATR                     FFTASDERFKRVVDEWMDKGLVREWGGLIGE
Sbjct: 124 LGGRMATRAIAAAGDQQQQQQLVFDHAAQFFTASDERFKRVVDEWMDKGLVREWGGLIGE 183

Query: 184 LDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLWRLFE 243
           LDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLWRLFE
Sbjct: 184 LDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLWRLFE 243

Query: 244 NEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLPIPQT 303
           NEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLPIPQT
Sbjct: 244 NEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLPIPQT 303

Query: 304 DSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENIPKI 363
           DSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENIPKI
Sbjct: 304 DSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENIPKI 363

Query: 364 TAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAGICG 423
           TAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAGICG
Sbjct: 364 TAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAGICG 423

Query: 424 DWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLES 483
           DWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLES
Sbjct: 424 DWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLES 483

Query: 484 QKPHVAEAQLTPST 497
           QKPHVAEAQLTPST
Sbjct: 484 QKPHVAEAQLTPST 497



>Os03g0784000 FAD dependent oxidoreductase family protein
          Length = 382

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 149/355 (41%), Gaps = 49/355 (13%)

Query: 117 FDTGMHGLGGRMATRXXXXXXXXXXXXXXXXXXXXXFFTASDERFKRVVDEWMDKGLVRE 176
           FD+G  G GGRMA R                     +FT S++   RVV  W  +GLV E
Sbjct: 41  FDSG-RGAGGRMAQRREVMEDGTELRFDHGAP----YFTVSNDEVARVVSGWEARGLVAE 95

Query: 177 WGGLIGELD--AGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIE-----VVRPCWI 229
           W  +    D  AG         +  +Y+GV GM  +  ++  E  ++      + R  WI
Sbjct: 96  WKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTIGRMDWI 155

Query: 230 SKLEPFNGLWRLFE-NEKPHGQYDAIVIAHNGKCANRLLSTSG---------LPLLTRQM 279
                    W L   + +  G +D +V       + R    +G         LP L+  +
Sbjct: 156 QDRSS----WLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRPPPLDLSLLPQLSMMI 211

Query: 280 KRLQLSSVWALLAAFQDPL-PIPQTDSYGTFEGAFVKDVDSLSWMANNTQK----LFPLQ 334
           + + +   +AL+ AF +PL  +P        +G    + D LSW   ++ K      PL 
Sbjct: 212 QDIPVRPCFALMLAFSEPLTKVP-------VQGFSFNNSDYLSWAFCDSSKPGRAHVPLN 264

Query: 335 TGRPECWTFFSTAAYGKR--NKVPQENIPKITAEKVKEDMLRGVELALGLSRGSLQQPFY 392
           +   + W   STA Y  +  N +           KV E++L+  + A GL+   + QP +
Sbjct: 265 S---QSWVLHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQ-ATGLN---IPQPIF 317

Query: 393 TRVQLWGAALPMN--TPGVPCIFDPQGRAGICGDWLTGSSIEAAVLSGMSLANHI 445
            +   WG+A P    +    C++D   +  ICGD+ T  S+E AVLSGM  A+ I
Sbjct: 318 MKAHRWGSAFPAIAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMRGASKI 372



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,769,805
Number of extensions: 626376
Number of successful extensions: 1390
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1387
Number of HSP's successfully gapped: 2
Length of query: 497
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 392
Effective length of database: 11,553,331
Effective search space: 4528905752
Effective search space used: 4528905752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)