Os12g0597400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HI0933-like protein family protein.
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Os12g0597400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HI0933-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.31 | 0.517 | 8.22 | 0.015 | 1.53 | 1.15 | 0.411 | -0.2 | -0.775 | 20.4 | 25.6 | 109 | -- | -- |
| 121.24 | 0.513 | 8.22 | 0.0367 | 1.52 | 1.13 | 0.396 | -- | -0.766 | 20.4 | 25.63 | 121 | -- | -- |
| 121.69 | 0.514 | 8.22 | 0.0459 | 1.51 | 1.12 | -- | 0.167 | -0.757 | 20.4 | 25.69 | 144 | -- | -- |
| 121.61 | 0.514 | 8.22 | 0.0199 | 1.47 | 1.15 | -- | -- | -0.763 | 20.4 | 25.7 | 176 | -- | -- |
| 197.95 | 0.655 | 8.2 | -0.113 | -- | 1.94 | -- | -0.12 | -0.859 | -- | 25.2 | 482 | -- | -- |
| 141.04 | 0.557 | 8.21 | 0.219 | 1.74 | -- | 0.829 | -- | -0.711 | 19.4 | -- | -- | -- | -- |
| 142.92 | 0.56 | 8.21 | 0.199 | 1.74 | -- | -- | -- | -0.71 | 19.5 | -- | -- | -- | -- |
| 197.93 | 0.655 | 8.2 | -0.152 | -- | 1.93 | -- | -- | -0.873 | -- | 25 | 483 | -- | -- |
| 121.59 | 0.514 | 8.22 | -- | 1.45 | 1.13 | -- | -- | -0.767 | 20.3 | 25.69 | 202 | -- | -- |
| 304.59 | 0.816 | 8.17 | 0.172 | -- | -- | -- | -- | -0.738 | -- | -- | -- | -- | -- |
| 143.96 | 0.561 | 8.22 | -- | 1.74 | -- | -- | -- | -0.733 | 19.5 | -- | -- | -- | -- |
| 198.52 | 0.656 | 8.19 | -- | -- | 1.9 | -- | -- | -0.852 | -- | 25.05 | 482 | -- | -- |
| 305.38 | 0.816 | 8.17 | -- | -- | -- | -- | -- | -0.757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 7 | 115.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 9 | 115.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 17 | 116.06 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 6 |
| 23 | 116.49 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 3 |
| 30 | 116.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 36 | 117.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 63 | 118.13 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 7 |
| 85 | 118.56 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 95 | 118.62 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 6 |
| 240 | 120.02 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 16 |
| 246 | 120.05 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 249 | 120.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 357 | 120.81 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 21 |
| 410 | 121.12 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 18 |
| 420 | 121.16 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 423 | 121.18 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 435 | 121.22 | radiation | 40 | 720 | < th | dose independent | sin | 10 | NA |
| 441 | 121.27 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 451 | 121.29 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 515 | 121.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 567 | 121.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 576 | 121.79 | radiation | 40 | 720 | > th | dose independent | rect. | 9 | 2 |
| 579 | 121.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 652 | 122.04 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 671 | 122.11 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 15 |
| 679 | 122.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 696 | 122.16 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 704 | 122.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 720 | 122.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 735 | 122.27 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 752 | 122.34 | radiation | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 791 | 122.45 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 837 | 122.55 | radiation | 40 | 720 | > th | dose independent | sin | 10 | NA |
| 854 | 122.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 909 | 122.71 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 956 | 122.79 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 959 | 122.80 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |