BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0597400 Os12g0597400|AK071949
(497 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04650.1 | chr3:1262017-1264343 FORWARD LENGTH=487 490 e-139
AT1G56000.1 | chr1:20944149-20946101 FORWARD LENGTH=385 98 9e-21
AT1G55980.1 | chr1:20938899-20941813 REVERSE LENGTH=467 68 1e-11
>AT3G04650.1 | chr3:1262017-1264343 FORWARD LENGTH=487
Length = 486
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/421 (60%), Positives = 294/421 (69%), Gaps = 18/421 (4%)
Query: 65 SRQSAIKKSFHQEQVVFSTPVPPDPSXXXXXXXXXXXXXXXXXXXXXXXXXXFDTGMHGL 124
SR+S +KKSF QEQV F+ V DP FDTG+HGL
Sbjct: 69 SRRSILKKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGL 128
Query: 125 GGRMATRXXXXXXXXXXXXXXXXXXXXXFFTASDERFKRVVDEWMDKGLVREWGGLIGEL 184
GGR+ TR FFTA D RF ++VD W++KGLVREW G +GEL
Sbjct: 129 GGRLGTRIIEPQGLIFDHAAQ-------FFTADDSRFIKLVDGWLEKGLVREWKGAVGEL 181
Query: 185 DAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLWRLFEN 244
+ GG F PSSSPPRYI +GMR LAD++L ES ++ +VRPCWISKLEP NG+W L EN
Sbjct: 182 EIGGSFSQFPSSSPPRYIAANGMRSLADSLLLESQMVNLVRPCWISKLEPLNGMWHLSEN 241
Query: 245 EKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLPIPQTD 304
P GQ+D IVIAHNGKCANRLLS SGLPL+ +QMK+L LSS+WALLAAF DPLP
Sbjct: 242 GTPRGQFDVIVIAHNGKCANRLLSASGLPLVAKQMKKLDLSSIWALLAAFDDPLPTVN-- 299
Query: 305 SYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGR--PECWTFFSTAAYGKRNKVPQENIPK 362
FEGAFVK V+SLSWM NN+ KL GR P CWTFFSTAAYGK+NKVPQENIP
Sbjct: 300 ----FEGAFVKGVESLSWMGNNSAKL---GNGRTPPHCWTFFSTAAYGKQNKVPQENIPT 352
Query: 363 ITAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAGIC 422
+TAEKVK ML+GVE+ALGL GSL +P YTR+QLWGAALP NTP VPCIFDPQGRAGIC
Sbjct: 353 VTAEKVKAGMLQGVEIALGLPEGSLPKPVYTRLQLWGAALPKNTPAVPCIFDPQGRAGIC 412
Query: 423 GDWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLE 482
GDWL GS++E+A +SG +L NHIA++ + PEEFAIGLH+ LS + GHDIGQFPGL
Sbjct: 413 GDWLLGSNLESAAISGAALGNHIAEFLQNGEANPEEFAIGLHDRLSPLAGHDIGQFPGLT 472
Query: 483 S 483
S
Sbjct: 473 S 473
>AT1G56000.1 | chr1:20944149-20946101 FORWARD LENGTH=385
Length = 384
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 54/356 (15%)
Query: 117 FDTGMHGLGGRMATRXXXXXXXXXXXXXXXXXXXXXFFTASDERFKRVVDEWMDKGLVRE 176
FD+G G GGRM+ R FF S+ +V EW +G V E
Sbjct: 49 FDSG-RGPGGRMSQRREIGEDGKELMFDHGAP----FFCVSNSDAMALVHEWESRGFVSE 103
Query: 177 WGGLIGELDAGGH--FRPMPSSSPPRYIGVDGMRPLADAILPESDLIE-----VVRPCWI 229
W + G D + +Y+GV GM ++ A+ ES + + + W+
Sbjct: 104 WKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWL 163
Query: 230 SKLEPFNGLWRLFENEKPH-GQYDAIVIAHNGKCANRLLSTSGLP---------LLTRQM 279
+ P W L +++ + G++D +V + + R +GLP L ++
Sbjct: 164 EEEIP----WLLTDSKGENLGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKL 219
Query: 280 KRLQLSSVWALLAAFQDPLP-IPQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRP 338
+ + + ++L+ AF++PL IP +G K+ + LSW + K P ++
Sbjct: 220 QNIPVLPCFSLMLAFKEPLSSIP-------VKGLSFKNSEILSWAHCESTK--PGRSTDS 270
Query: 339 ECWTFFSTAAYGKR-------NKVPQENIPKITAEKVKEDMLRGVELALGLSRGSLQQPF 391
E W ST Y K+ E + KI+ E KE G+ +L PF
Sbjct: 271 ERWILHSTPDYANSVIAKTGLQKLSSETLNKISEEMFKEFQCSGLVSSL---------PF 321
Query: 392 YTRVQLWGAALPMNTPGVP--CIFDPQGRAGICGDWLTGSSIEAAVLSGMSLANHI 445
+ + WG+A P + V C++D ICGD+ ++E A+LSG++ A+ +
Sbjct: 322 FMKAHRWGSAFPAKSIAVEERCLWDRNRNLAICGDFCVSPNVEGAILSGLAAASKL 377
>AT1G55980.1 | chr1:20938899-20941813 REVERSE LENGTH=467
Length = 466
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 52/307 (16%)
Query: 117 FDTGMHGLGGRMATRXXXXXXXXXXXXXXXXXXXXXFFTASDERFKRVVDEWMDKGLVRE 176
FD+G G GGRM+ R FF S+ +V EW +G V E
Sbjct: 187 FDSG-RGPGGRMSQRREIGEDGKELMFDHGAP----FFCVSNSDAMALVHEWESRGFVSE 241
Query: 177 WGGLIGELDAGGH--FRPMPSSSPPRYIGVDGMRPLADAILPESDLIE-----VVRPCWI 229
W + G D + +Y+GV GM ++ A+ ES + + + W+
Sbjct: 242 WKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWL 301
Query: 230 SKLEPFNGLWRLFENEKPH-GQYDAIVIAHNGKCANRLLSTSGL---------PLLTRQM 279
+ P W L +++ + G++D +V + + R +GL P L ++
Sbjct: 302 EEEIP----WLLTDSKGENLGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKL 357
Query: 280 KRLQLSSVWALLAAFQDPL-PIPQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRP 338
+ + + ++L+ AF++PL IP +G K+ + LSW + K P ++
Sbjct: 358 QNIPVLPCFSLMLAFKEPLSSIP-------VKGLSFKNSEILSWAHCESTK--PGRSTDS 408
Query: 339 ECWTFFSTAAYGKR-------NKVPQENIPKITAEKVKEDMLRGVELALGLSRGSLQQPF 391
E W ST Y K+ E + KI+ E KE G+ +L PF
Sbjct: 409 ERWILHSTPDYANSVIAKTGLQKLSSETLNKISEEMFKEFQCSGLVSSL---------PF 459
Query: 392 YTRVQLW 398
+ + W
Sbjct: 460 FMKAHRW 466
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,114,539
Number of extensions: 375582
Number of successful extensions: 744
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 3
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)