BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0595600 Os12g0595600|Os12g0595600
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0595600  SKP1 component family protein                       372   e-103
Os12g0594600  SKP1 component family protein                       171   4e-43

>Os12g0595600 SKP1 component family protein
          Length = 197

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 16  VPLPLVLRFRNGEDRFALTDQPRQLPLGYAIDAPSIRSARTFGLLDEYARVHAQHARGGP 75
           VPLPLVLRFRNGEDRFALTDQPRQLPLGYAIDAPSIRSARTFGLLDEYARVHAQHARGGP
Sbjct: 16  VPLPLVLRFRNGEDRFALTDQPRQLPLGYAIDAPSIRSARTFGLLDEYARVHAQHARGGP 75

Query: 76  GAVPDIAAWDRAFMEREVTDTDELHDLFMAVVGWITRKVDTTEWFWLRASLTTGSALWVA 135
           GAVPDIAAWDRAFMEREVTDTDELHDLFMAVVGWITRKVDTTEWFWLRASLTTGSALWVA
Sbjct: 76  GAVPDIAAWDRAFMEREVTDTDELHDLFMAVVGWITRKVDTTEWFWLRASLTTGSALWVA 135

Query: 136 EEAASTLEMDGLSVLCAQKTADVVKKRTVEEVKALLGIADVGMTPEEELKLQHDNDAILC 195
           EEAASTLEMDGLSVLCAQKTADVVKKRTVEEVKALLGIADVGMTPEEELKLQHDNDAILC
Sbjct: 136 EEAASTLEMDGLSVLCAQKTADVVKKRTVEEVKALLGIADVGMTPEEELKLQHDNDAILC 195

Query: 196 LR 197
           LR
Sbjct: 196 LR 197



>Os12g0594600 SKP1 component family protein
          Length = 157

 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 112/181 (61%), Gaps = 35/181 (19%)

Query: 17  PLPLVLRFRNGEDRFALTDQPRQLPLGYAIDAPSIRSARTFGLLDEYARVHAQHARGGPG 76
           P  L+LRFR+GE RFA TD   ++PLGYAI AP IR+ R F LLDEYAR HA+   GG  
Sbjct: 12  PSRLMLRFRDGELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYARTHARG--GGAD 69

Query: 77  AVPDIAAWDRAFMEREVTDTDELHDLFMAVVGWITRKVDTTEWFWLRASLTTGSALWVAE 136
           AV +IAAWDR FM REVTDT  L+DLF+                                
Sbjct: 70  AVANIAAWDRDFMAREVTDTVTLYDLFV-------------------------------- 97

Query: 137 EAASTLEMDGLSVLCAQKTADVVKKRTVEEVKALLGIADVGMTPEEELKLQHDNDAILCL 196
             A+ L +DGLS LCAQ TAD VK R V EVKALLGI DVGMT EEELKLQ DNDAIL L
Sbjct: 98  -GATALGIDGLSDLCAQMTADAVKGRPVGEVKALLGITDVGMTQEEELKLQQDNDAILYL 156

Query: 197 R 197
           R
Sbjct: 157 R 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,568,620
Number of extensions: 264221
Number of successful extensions: 554
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)