Os12g0595600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SKP1 component family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0595600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : SKP1 component family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.4 | 0.702 | 5.2 | 0.833 | 1.44 | 2.81 | -0.398 | -4.17 | 0.133 | 18.6 | 23.53 | 157 | -- | -- |
| 232.84 | 0.711 | 5.15 | 1.3 | 1.38 | 2.69 | -1.06 | -- | 0.256 | 18.4 | 23.43 | 160 | -- | -- |
| 223.75 | 0.697 | 5.2 | 0.817 | 1.45 | 2.82 | -- | -4.36 | 0.129 | 18.6 | 23.56 | 155 | -- | -- |
| 233.48 | 0.712 | 5.13 | 1.47 | 1.54 | 2.39 | -- | -- | 0.308 | 18.5 | 23.2 | 156 | -- | -- |
| 284.76 | 0.786 | 5.22 | 0.437 | -- | 3.92 | -- | -5.77 | -0.0232 | -- | 24 | 286 | -- | -- |
| 329.79 | 0.851 | 5.07 | 1.93 | 2.43 | -- | -0.322 | -- | 0.639 | 17.5 | -- | -- | -- | -- |
| 330.04 | 0.851 | 5.07 | 1.94 | 2.43 | -- | -- | -- | 0.638 | 17.5 | -- | -- | -- | -- |
| 303.22 | 0.811 | 5.12 | 1.28 | -- | 3.42 | -- | -- | 0.214 | -- | 23.95 | 283 | -- | -- |
| 286.28 | 0.788 | 5.18 | -- | 1.38 | 2.81 | -- | -- | 0.0742 | 18.8 | 22.84 | 159 | -- | -- |
| 637.31 | 1.18 | 5.03 | 1.86 | -- | -- | -- | -- | 0.579 | -- | -- | -- | -- | -- |
| 428.83 | 0.969 | 5.12 | -- | 2.4 | -- | -- | -- | 0.422 | 17.5 | -- | -- | -- | -- |
| 343.8 | 0.864 | 5.16 | -- | -- | 3.63 | -- | -- | 0.00925 | -- | 23.53 | 284 | -- | -- |
| 728.16 | 1.26 | 5.08 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 223.21 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 2 | 223.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 22 |
| 3 | 223.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 45 | 227.27 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 47 | 227.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 52 | 227.87 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 84 | 228.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 98 | 229.19 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 103 | 229.40 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 141 | 230.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 256 | 233.79 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 291 | 234.54 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 394 | 236.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 491 | 238.63 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 534 | 239.34 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 562 | 239.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 674 | 243.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 723 | 244.09 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 11 |
| 754 | 244.51 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 15 |
| 782 | 244.96 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 886 | 246.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 903 | 247.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 931 | 247.47 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |