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Os12g0594600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SKP1 component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.17 (0.0282) R2 : 0.782
β1 : 2.75 (0.108) R2dD : 0.36 R2D : 0.203
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.34 (0.131) R2dE : 0.0604 R2E : 0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.56 (0.0629) R2dN8 : 0.442 R2N8 : 0.284
σ : 0.521
deviance : 124.95
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C
peak time of C : --
E
wheather : temperature
threshold : -13.15
memory length : 843
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.37 0.482 7.26 2.17 0.613 1.77 -1.64 -3.93 1.38 0.0984 8.874 14 -- --
114.59 0.499 7.19 2.73 0.65 1.77 -0.7 -- 1.52 0.373 -1.14 6 -- --
113.27 0.496 7.23 2.47 0.665 1.87 -- -1.99 1.44 0.748 2.259 14 -- --
116.47 0.503 7.19 2.74 0.677 1.84 -- -- 1.51 0.702 6.33 7 -- --
114.23 0.498 7.26 2.08 -- 1.39 -- -3.65 1.38 -- -1.533 793 -- --
143.81 0.562 7.13 3.06 0.28 -- -1.19 -- 1.77 21.4 -- -- -- --
148.92 0.571 7.13 3.1 0.284 -- -- -- 1.77 21.6 -- -- -- --
124.95 0.521 7.17 2.75 -- 1.34 -- -- 1.56 -- -13.15 843 -- --
295.28 0.8 7.3 -- 1.09 3.19 -- -- 1.04 1.52 -31.7 15 -- --
153.7 0.579 7.12 3.11 -- -- -- -- 1.77 -- -- -- -- --
402.73 0.939 7.21 -- 0.296 -- -- -- 1.43 22.4 -- -- -- --
167.62 0.603 7.37 -- -- 2.49 -- -- 0.681 -- -23.25 47520 -- --
408.09 0.943 7.2 -- -- -- -- -- 1.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.21 temperature 25.0 270 < th dose dependent rect. 23 21
3 97.91 temperature 10.0 270 > th dose dependent sin 6 NA
5 98.07 temperature 15.0 270 > th dose dependent rect. 17 22
10 98.54 temperature 30.0 270 < th dose dependent sin 6 NA
54 101.95 wind 9.0 14400 > th dose independent rect. 20 1
64 102.25 temperature 15.0 270 > th dose dependent rect. 24 13
84 102.77 temperature 30.0 270 < th dose dependent rect. 23 12
101 103.17 temperature 15.0 90 > th dose dependent rect. 8 23
121 103.69 temperature 15.0 10 > th dose dependent rect. 8 23
127 103.79 wind 9.0 14400 < th dose independent rect. 20 1
133 103.89 wind 5.0 14400 > th dose dependent rect. 20 1
147 104.18 wind 3.0 43200 > th dose dependent rect. 18 6
148 104.19 wind 9.0 14400 > th dose dependent rect. 20 1
160 104.59 temperature 30.0 30 < th dose dependent rect. 5 23
169 104.75 temperature 30.0 30 < th dose dependent rect. 7 23
170 104.77 wind 5.0 43200 < th dose independent rect. 18 6
175 104.89 temperature 30.0 90 < th dose dependent rect. 13 23
181 104.96 temperature 10.0 720 > th dose dependent rect. 19 17
195 105.13 wind 9.0 14400 > th dose independent rect. 20 14
207 105.21 wind 9.0 43200 < th dose dependent rect. 18 6
221 105.31 wind 5.0 43200 > th dose independent rect. 18 6
225 105.34 wind 5.0 43200 < th dose independent rect. 17 9
237 105.43 temperature 10.0 10 > th dose dependent no NA NA
243 105.52 wind 9.0 14400 > th dose independent rect. 20 5
244 105.52 wind 9.0 14400 < th dose independent rect. 20 10
245 105.52 wind 9.0 14400 < th dose independent rect. 20 12
256 105.59 wind 9.0 14400 < th dose independent rect. 20 8
257 105.59 wind 9.0 14400 > th dose dependent rect. 20 4
263 105.62 wind 9.0 14400 > th dose dependent rect. 20 9
268 105.65 wind 5.0 43200 > th dose independent rect. 17 9
272 105.66 wind 9.0 14400 < th dose independent rect. 20 5
280 105.68 temperature 30.0 10 < th dose dependent rect. 15 23
284 105.71 wind 9.0 14400 > th dose independent rect. 20 10
287 105.72 humidity 90.0 14400 > th dose dependent rect. 21 1
290 105.73 wind 9.0 14400 > th dose independent rect. 20 8
298 105.75 temperature 30.0 90 < th dose dependent no NA NA
318 105.85 wind 9.0 14400 < th dose independent rect. 20 14
327 105.90 wind 9.0 14400 > th dose independent rect. 19 3
342 106.00 wind 5.0 14400 > th dose independent rect. 20 20
353 106.05 temperature 30.0 30 < th dose dependent rect. 11 23
371 106.13 temperature 25.0 720 < th dose dependent rect. 17 19
407 106.30 wind 5.0 14400 < th dose independent rect. 20 20
410 106.31 wind 9.0 14400 > th dose dependent sin 11 NA
450 106.50 temperature 30.0 720 < th dose dependent rect. 20 16
451 106.50 temperature 30.0 10 < th dose dependent rect. 1 23
452 106.51 wind 5.0 43200 > th dose independent rect. 16 13
508 106.70 wind 9.0 14400 > th dose dependent rect. 17 18
510 106.71 wind 9.0 14400 > th dose independent rect. 17 17
528 106.77 wind 9.0 14400 > th dose independent sin 10 NA
535 106.79 wind 5.0 14400 < th dose independent rect. 23 17
548 106.83 wind 9.0 14400 > th dose dependent rect. 17 12
557 106.85 wind 9.0 14400 > th dose independent rect. 17 8
559 106.85 wind 9.0 14400 > th dose dependent rect. 17 7
567 106.87 wind 9.0 14400 < th dose independent sin 11 NA
571 106.88 wind 9.0 14400 > th dose independent rect. 17 12
614 106.96 humidity 90.0 14400 > th dose dependent rect. 10 1
667 107.10 wind 5.0 14400 > th dose independent sin 4 NA
683 107.15 temperature 30.0 10 < th dose dependent rect. 23 23
707 107.21 wind 5.0 14400 < th dose independent sin 4 NA
710 107.22 humidity 90.0 14400 > th dose independent rect. 10 1
734 107.27 wind 9.0 14400 > th dose dependent rect. 17 4
736 107.27 temperature 30.0 30 < th dose dependent rect. 17 23
749 107.31 wind 5.0 14400 > th dose dependent rect. 15 20
771 107.36 temperature 30.0 10 < th dose dependent rect. 3 23
787 107.39 temperature 15.0 10 > th dose dependent rect. 19 23
819 107.47 wind 5.0 14400 > th dose independent rect. 15 21
820 107.48 wind 5.0 14400 > th dose independent rect. 15 23
825 107.49 wind 5.0 14400 > th dose independent rect. 13 23
832 107.51 temperature 25.0 10 < th dose dependent rect. 24 21
843 107.54 temperature 30.0 30 < th dose dependent rect. 9 23
865 107.60 precipitation 0.1 43200 > th dose independent rect. 23 13
866 107.60 precipitation 0.1 43200 < th dose independent rect. 23 13
871 107.60 precipitation 0.1 43200 < th dose dependent rect. 23 13
892 107.65 temperature 30.0 30 < th dose dependent rect. 19 23
915 107.72 wind 7.0 14400 < th dose independent rect. 15 20
917 107.72 wind 5.0 14400 > th dose dependent rect. 19 21
955 107.82 wind 5.0 14400 > th dose independent no NA NA
981 107.88 wind 5.0 14400 > th dose independent rect. 6 23
982 107.88 wind 5.0 14400 > th dose independent rect. 11 23
983 107.88 wind 3.0 43200 > th dose dependent sin 13 NA
989 107.90 wind 5.0 14400 < th dose independent rect. 15 23
998 107.92 precipitation 0.1 43200 > th dose dependent rect. 6 8
999 107.93 wind 5.0 43200 < th dose independent sin 13 NA