BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0594600 Os12g0594600|AK101239
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21850.1  | chr3:7697089-7697550 REVERSE LENGTH=154             54   3e-08
AT1G75950.1  | chr1:28516715-28517454 FORWARD LENGTH=161           51   3e-07
AT3G60010.1  | chr3:22163094-22163558 REVERSE LENGTH=155           49   1e-06
AT2G03160.1  | chr2:959645-960247 FORWARD LENGTH=201               47   4e-06

>AT3G21850.1 | chr3:7697089-7697550 REVERSE LENGTH=154
          Length = 153

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 35  VPLGYAIGAPFIRNERIFRLLDEYA-RTHARGGGADAVANIAAWDRDFMAREVTDTVTLY 93
           +PL    G       +I  ++ EY  + H       +  ++  WD++FM +   DT T++
Sbjct: 43  IPLPNVTG-------KILAMVIEYCNKHHVDAANPCSDDDLKKWDKEFMEK---DTSTIF 92

Query: 94  DLFVGATALGIDGLSDLCAQMTADAVKGRPVGEVKALLGITDVGMTQEEELKLQQDN 150
           DL   A  L I  L DL  Q  A+ +KG    +++    I +  +T EEE  ++++N
Sbjct: 93  DLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIEN-DLTPEEEAAIRREN 148



>AT1G75950.1 | chr1:28516715-28517454 FORWARD LENGTH=161
          Length = 160

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 50  RIFRLLDEYARTHARGGGADAVA---------NIAAWDRDFMAREVTDTVTLYDLFVGAT 100
           +I   + EY + H     + A A         ++ AWD DFM     D  TL++L + A 
Sbjct: 50  KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMK---IDQATLFELILAAN 106

Query: 101 ALGIDGLSDLCAQMTADAVKGRPVGEVKALLGITD 135
            L I  L DL  Q  AD +KG+   E++    I +
Sbjct: 107 YLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKN 141



>AT3G60010.1 | chr3:22163094-22163558 REVERSE LENGTH=155
          Length = 154

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 35  VPLGYAIGAPFIRNERIFRLLDEYARTHARGGGA--DAVANIAAWDRDFMAREVTDTVTL 92
           VP+    G        I   + EY + H        ++   +  WD +FM + +  + TL
Sbjct: 41  VPIANVTGV-------ILSKVIEYCKKHVVSDSPTEESKDELKKWDAEFM-KALEQSSTL 92

Query: 93  YDLFVGATALGIDGLSDLCAQMTADAVKGRPVGEVKALLGITD 135
           +D+ + A  L I  L DL  Q  AD + G+   E++ALLGI +
Sbjct: 93  FDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIEN 135



>AT2G03160.1 | chr2:959645-960247 FORWARD LENGTH=201
          Length = 200

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 61  THARGGGADAVANIAAWDRDFMAREVTDTVTLYDLFVGATALGIDGLSDLCAQMTADAVK 120
           T       D    +  WD  FM     D  T++D+ + A  L + GL DLC++  AD +K
Sbjct: 99  TEGDDEAEDKKEKLNEWDAKFMKD--FDIKTIFDIILAANYLNVQGLFDLCSKTIADYIK 156

Query: 121 GRPVGEVKALLGITDVGMTQEEELKLQQDN 150
                EV+ L  I +   T EEE  ++ +N
Sbjct: 157 DMTPEEVRELFNIEN-DFTPEEEEAIRNEN 185



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,854,700
Number of extensions: 103751
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 7
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)