BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0594600 Os12g0594600|AK101239
         (157 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0594600  SKP1 component family protein                       293   2e-80
Os12g0595600  SKP1 component family protein                       171   3e-43

>Os12g0594600 SKP1 component family protein
          Length = 157

 Score =  293 bits (751), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 12  PSRLMLRFRDGELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYARTHARGGGADAV 71
           PSRLMLRFRDGELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYARTHARGGGADAV
Sbjct: 12  PSRLMLRFRDGELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYARTHARGGGADAV 71

Query: 72  ANIAAWDRDFMAREVTDTVTLYDLFVGATALGIDGLSDLCAQMTADAVKGRPVGEVKALL 131
           ANIAAWDRDFMAREVTDTVTLYDLFVGATALGIDGLSDLCAQMTADAVKGRPVGEVKALL
Sbjct: 72  ANIAAWDRDFMAREVTDTVTLYDLFVGATALGIDGLSDLCAQMTADAVKGRPVGEVKALL 131

Query: 132 GITDVGMTQEEELKLQQDNDAILYLR 157
           GITDVGMTQEEELKLQQDNDAILYLR
Sbjct: 132 GITDVGMTQEEELKLQQDNDAILYLR 157



>Os12g0595600 SKP1 component family protein
          Length = 197

 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 112/181 (61%), Gaps = 35/181 (19%)

Query: 12  PSRLMLRFRDGELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYARTHARG--GGAD 69
           P  L+LRFR+GE RFA TD   ++PLGYAI AP IR+ R F LLDEYAR HA+   GG  
Sbjct: 17  PLPLVLRFRNGEDRFALTDQPRQLPLGYAIDAPSIRSARTFGLLDEYARVHAQHARGGPG 76

Query: 70  AVANIAAWDRDFMAREVTDTVTLYDLFV-------------------------------- 97
           AV +IAAWDR FM REVTDT  L+DLF+                                
Sbjct: 77  AVPDIAAWDRAFMEREVTDTDELHDLFMAVVGWITRKVDTTEWFWLRASLTTGSALWVAE 136

Query: 98  -GATALGIDGLSDLCAQMTADAVKGRPVGEVKALLGITDVGMTQEEELKLQQDNDAILYL 156
             A+ L +DGLS LCAQ TAD VK R V EVKALLGI DVGMT EEELKLQ DNDAIL L
Sbjct: 137 EAASTLEMDGLSVLCAQKTADVVKKRTVEEVKALLGIADVGMTPEEELKLQHDNDAILCL 196

Query: 157 R 157
           R
Sbjct: 197 R 197



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,765,085
Number of extensions: 185700
Number of successful extensions: 486
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)