BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0595500 Os12g0595500|Os12g0595500
         (144 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0595500  Hypothetical protein                                268   1e-72
Os03g0353000  Hypothetical protein                                227   2e-60

>Os12g0595500 Hypothetical protein
          Length = 144

 Score =  268 bits (685), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/144 (90%), Positives = 131/144 (90%)

Query: 1   MEXXXXXXXXXXXXXLPMVKLRGGDGVEFSVQARRLAELAPRHVWDLPAIESGDIYDTVQ 60
           ME             LPMVKLRGGDGVEFSVQARRLAELAPRHVWDLPAIESGDIYDTVQ
Sbjct: 1   MEGAAAAAGAGAGAGLPMVKLRGGDGVEFSVQARRLAELAPRHVWDLPAIESGDIYDTVQ 60

Query: 61  LYRRNAERFTSRATGGLLPQGVLNVQTIFAQRVNDLDTLGHLTRAAIVLGMEDLKDECYN 120
           LYRRNAERFTSRATGGLLPQGVLNVQTIFAQRVNDLDTLGHLTRAAIVLGMEDLKDECYN
Sbjct: 61  LYRRNAERFTSRATGGLLPQGVLNVQTIFAQRVNDLDTLGHLTRAAIVLGMEDLKDECYN 120

Query: 121 RMLQDHQMGPQQVKLFLQNVLGHP 144
           RMLQDHQMGPQQVKLFLQNVLGHP
Sbjct: 121 RMLQDHQMGPQQVKLFLQNVLGHP 144



>Os03g0353000 Hypothetical protein
          Length = 138

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 118/128 (92%)

Query: 16  LPMVKLRGGDGVEFSVQARRLAELAPRHVWDLPAIESGDIYDTVQLYRRNAERFTSRATG 75
           +PMVK+R GDGVEFSVQARRLAELAP ++WDLPAIESGDIYDTVQLYR NAE FTSRATG
Sbjct: 10  VPMVKVRVGDGVEFSVQARRLAELAPGYIWDLPAIESGDIYDTVQLYRMNAELFTSRATG 69

Query: 76  GLLPQGVLNVQTIFAQRVNDLDTLGHLTRAAIVLGMEDLKDECYNRMLQDHQMGPQQVKL 135
            LLPQGVL VQ+IFA+RV+DLDTLGHLTRAAI L MEDLKDEC+ RMLQDHQM PQ+VKL
Sbjct: 70  ELLPQGVLRVQSIFAERVHDLDTLGHLTRAAIALDMEDLKDECHKRMLQDHQMSPQEVKL 129

Query: 136 FLQNVLGH 143
           FLQNVLGH
Sbjct: 130 FLQNVLGH 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,223,404
Number of extensions: 148980
Number of successful extensions: 281
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)