Os03g0353000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0353000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.41 | 0.38 | 9.61 | 0.984 | 0.0685 | 2.16 | 0.103 | -3.28 | 0.519 | 9.24 | 19.86 | 807 | -- | -- |
| 70.66 | 0.392 | 9.52 | 1.62 | 0.0282 | 2.49 | 0.762 | -- | 0.717 | 8.76 | 14.29 | 812 | -- | -- |
| 64.94 | 0.375 | 9.62 | 0.878 | 0.0528 | 2.13 | -- | -3.75 | 0.498 | 10.6 | 20.52 | 850 | -- | -- |
| 72.3 | 0.396 | 9.51 | 1.68 | 0.0306 | 2.49 | -- | -- | 0.718 | 10.4 | 14.27 | 815 | -- | -- |
| 65.13 | 0.376 | 9.62 | 0.9 | -- | 2.1 | -- | -3.64 | 0.502 | -- | 20.46 | 851 | -- | -- |
| 153.65 | 0.581 | 9.45 | 2.3 | 0.508 | -- | -0.455 | -- | 1.1 | 21.1 | -- | -- | -- | -- |
| 154.38 | 0.582 | 9.45 | 2.32 | 0.509 | -- | -- | -- | 1.1 | 21.1 | -- | -- | -- | -- |
| 72.32 | 0.396 | 9.52 | 1.66 | -- | 2.47 | -- | -- | 0.714 | -- | 14.1 | 821 | -- | -- |
| 100.78 | 0.468 | 9.62 | -- | 0.457 | 2.88 | -- | -- | 0.29 | 20.2 | -26.08 | 6776 | -- | -- |
| 169.38 | 0.608 | 9.43 | 2.32 | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
| 296.04 | 0.805 | 9.5 | -- | 0.51 | -- | -- | -- | 0.845 | 21.5 | -- | -- | -- | -- |
| 106.87 | 0.481 | 9.64 | -- | -- | 2.96 | -- | -- | 0.176 | -- | -9.782 | 8007 | -- | -- |
| 311.33 | 0.824 | 9.49 | -- | -- | -- | -- | -- | 0.843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 62.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 14 | 63.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 17 | 63.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 21 | 63.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 22 | 63.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 75 | 64.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 76 | 64.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 102 | 64.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 209 | 65.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 252 | 65.90 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 376 | 66.50 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 415 | 66.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 416 | 66.66 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 476 | 66.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 663 | 67.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 692 | 67.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 771 | 67.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 972 | 67.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 988 | 67.98 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |