BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0591300 Os12g0591300|Os12g0591300
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0591300                                                      154   4e-38
Os03g0285000                                                       85   3e-17

>Os12g0591300 
          Length = 191

 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 86/121 (71%)

Query: 71  VEVETLRSSINGSIAGDITXXXXXXXXXXXXXXXXXXXXXVAYLHXXXXXXXXXXXXXXN 130
           VEVETLRSSINGSIAGDIT                     VAYLH              N
Sbjct: 71  VEVETLRSSINGSIAGDITADRELEELARGRAREQAERWAVAYLHGGGGGPRDRAPADGN 130

Query: 131 PDGRRRAGGSRSPHAALAGSTALSPLTGAMVTTASRRWSGTLVPAVGGLPSPKPTTSSGP 190
           PDGRRRAGGSRSPHAALAGSTALSPLTGAMVTTASRRWSGTLVPAVGGLPSPKPTTSSGP
Sbjct: 131 PDGRRRAGGSRSPHAALAGSTALSPLTGAMVTTASRRWSGTLVPAVGGLPSPKPTTSSGP 190

Query: 191 R 191
           R
Sbjct: 191 R 191



>Os03g0285000 
          Length = 453

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 58/106 (54%), Gaps = 12/106 (11%)

Query: 71  VEVETLRSSINGSIAGDITXXXXXXXXXXXXXXXXXXXXXVAYLHXXXXXXXXXXXXXXN 130
           VEVETLRSSINGSIAGDIT                      A+LH              N
Sbjct: 71  VEVETLRSSINGSIAGDITADRELEELARGRARERAERWAAAHLHGGGPRDRAPADG--N 128

Query: 131 PDGRRRAGGSRSPHAALAGSTALSPLTGAMVTTASRRWSGTLVPAV 176
           PDGR RAGGS           ALSPLTGAMVTTASRRWSGTLVPAV
Sbjct: 129 PDGRGRAGGS----------AALSPLTGAMVTTASRRWSGTLVPAV 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,393,446
Number of extensions: 116195
Number of successful extensions: 703
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)