Os03g0285000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0285000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.61 | 0.44 | 3.2 | 0.918 | 0.611 | -0.743 | 0.581 | 2.25 | 0.303 | 16.2 | 9.982 | 10 | -- | -- |
| 90.92 | 0.448 | 3.24 | 0.61 | 0.63 | -0.753 | 1.14 | -- | 0.222 | 16 | 14.4 | 19 | -- | -- |
| 88.35 | 0.438 | 3.2 | 0.986 | 0.604 | -0.725 | -- | 2.74 | 0.321 | 16.1 | 6.199 | 9 | -- | -- |
| 94.63 | 0.456 | 3.24 | 0.61 | 0.62 | -0.682 | -- | -- | 0.218 | 16.1 | 12.49 | 19 | -- | -- |
| 102.85 | 0.472 | 3.21 | 0.877 | -- | -0.121 | -- | 2.93 | 0.231 | -- | 3.07 | 8 | -- | -- |
| 96.5 | 0.461 | 3.26 | 0.472 | 0.446 | -- | 1.01 | -- | 0.117 | 16.6 | -- | -- | -- | -- |
| 99.11 | 0.466 | 3.26 | 0.478 | 0.457 | -- | -- | -- | 0.122 | 16.9 | -- | -- | -- | -- |
| 110.06 | 0.491 | 3.26 | 0.474 | -- | -0.0677 | -- | -- | 0.119 | -- | 12.49 | 19 | -- | -- |
| 103.54 | 0.477 | 3.26 | -- | 0.537 | -0.389 | -- | -- | 0.115 | 16.4 | 10.15 | 23 | -- | -- |
| 110.13 | 0.49 | 3.26 | 0.462 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 105.14 | 0.48 | 3.28 | -- | 0.449 | -- | -- | -- | 0.0689 | 16.9 | -- | -- | -- | -- |
| 115.51 | 0.501 | 3.27 | -- | -- | 0.124 | -- | -- | 0.0458 | -- | -1.899 | 146 | -- | -- |
| 115.75 | 0.502 | 3.27 | -- | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 6 | 84.43 | temperature | 10 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 8 | 84.64 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 13 | 84.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 41 | 85.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 61 | 85.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 63 | 85.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 91 | 85.82 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 211 | 86.56 | temperature | 30 | 90 | < th | dose independent | rect. | 21 | 22 |
| 273 | 86.91 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 282 | 86.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 285 | 86.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 318 | 87.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 336 | 87.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 356 | 87.26 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 14 |
| 368 | 87.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 381 | 87.34 | radiation | 30 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 404 | 87.40 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 406 | 87.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 407 | 87.41 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 412 | 87.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 436 | 87.51 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 459 | 87.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 472 | 87.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 477 | 87.61 | temperature | 30 | 90 | < th | dose independent | rect. | 15 | 12 |
| 478 | 87.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 481 | 87.62 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 483 | 87.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 486 | 87.63 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 488 | 87.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 493 | 87.64 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 511 | 87.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 513 | 87.69 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 517 | 87.70 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 525 | 87.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 549 | 87.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 566 | 87.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 571 | 87.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 581 | 87.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 594 | 87.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 595 | 87.89 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 609 | 87.91 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 614 | 87.92 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 10 |
| 615 | 87.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 633 | 87.95 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 638 | 87.96 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 644 | 87.97 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 20 |
| 662 | 87.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 688 | 88.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 696 | 88.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 714 | 88.08 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 721 | 88.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 722 | 88.09 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 729 | 88.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 732 | 88.11 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 734 | 88.11 | radiation | 10 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 755 | 88.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 760 | 88.14 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 790 | 88.17 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 791 | 88.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 792 | 88.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 798 | 88.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 802 | 88.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 829 | 88.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 840 | 88.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 843 | 88.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 850 | 88.23 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 868 | 88.25 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 875 | 88.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 897 | 88.27 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 939 | 88.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 974 | 88.32 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 981 | 88.33 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 986 | 88.33 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |