BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0580400 Os12g0580400|AK099986
(447 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0580400 Amino acid/polyamine transporter I family protein 533 e-152
Os02g0700500 Amino acid/polyamine transporter I family protein 255 6e-68
Os03g0576900 Amino acid/polyamine transporter I family protein 234 1e-61
Os03g0375100 Amino acid/polyamine transporter I family protein 181 1e-45
Os08g0525300 139 4e-33
>Os12g0580400 Amino acid/polyamine transporter I family protein
Length = 447
Score = 533 bits (1373), Expect = e-152, Method: Compositional matrix adjust.
Identities = 285/353 (80%), Positives = 285/353 (80%)
Query: 1 MTGACEAAPARRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWS 60
MTGACEAAPARRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWS
Sbjct: 1 MTGACEAAPARRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWS 60
Query: 61 LPEALVTAELASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLR 120
LPEALVTAELASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLR
Sbjct: 61 LPEALVTAELASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLR 120
Query: 121 SGGGLVLSPPXXXXXXXXXXXXXXXXNFRGLHLVGXXXXXXXXXXXXPFVALAVLAAPKI 180
SGGGLVLSPP NFRGLHLVG PFVALAVLAAPKI
Sbjct: 121 SGGGLVLSPPARSLAVLALTAALTYLNFRGLHLVGLSALALTAFSLSPFVALAVLAAPKI 180
Query: 181 RPSRWLAVNVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKXXXXXXXXXXXX 240
RPSRWLAVNVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPK
Sbjct: 181 RPSRWLAVNVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKAVFGAVGLVVGA 240
Query: 241 YLIPLLAGTGALPSETAGEWTDGFFSVVGDRIGGPVAARVDPGRRGHVQHGALRGRDERR 300
YLIPLLAGTGALPSETAGEWTDGFFSVVGDRIGGPVAARVDPGRRGHVQHGALRGRDERR
Sbjct: 241 YLIPLLAGTGALPSETAGEWTDGFFSVVGDRIGGPVAARVDPGRRGHVQHGALRGRDERR 300
Query: 301 LVPAPRXXXXXXXXXXLRAQVAPRHADVQXXXXXXXXXXXXXXXXXXDRRVPQ 353
LVPAPR LRAQVAPRHADVQ DRRVPQ
Sbjct: 301 LVPAPRHGGDGHDPGDLRAQVAPRHADVQHPLLGHRRRHPLLHELPGDRRVPQ 353
>Os02g0700500 Amino acid/polyamine transporter I family protein
Length = 531
Score = 255 bits (651), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 132/266 (49%), Positives = 171/266 (64%), Gaps = 2/266 (0%)
Query: 9 PARRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWSLPEALVTA 68
P+ R ++++PL+ LIFY+VSGGPFGIEDSV A G LL I+GFLVLPV+WS+PEAL+TA
Sbjct: 77 PSSARTVSMIPLIFLIFYEVSGGPFGIEDSVGAAG-PLLAIIGFLVLPVIWSIPEALITA 135
Query: 69 ELASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLRSGGGLVLS 128
EL + FP N GYV WV++A GP F G+ KW SG +DNALYPVLFLDYL+SG +
Sbjct: 136 ELGAMFPENGGYVVWVASALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGVPALGG 195
Query: 129 PPXXXXXXXXXXXXXXXXNFRGLHLVGXXXXXXXXXXXXPFVALAVLAAPKIRPSRWLAV 188
N+RGL +VG PF + ++A PK+RP+RWL +
Sbjct: 196 GAPRAFAVVGLTAVLTLLNYRGLTVVGWVAICLGVFSLLPFFVMGLIALPKLRPARWLVI 255
Query: 189 NVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKXXXXXXXXXXXXYLIPLLAG 248
++ V+ Y N++FWNLNYWD STLAGEV+ P KT PK YL PLLAG
Sbjct: 256 DLHNVDWNLYLNTLFWNLNYWDSISTLAGEVKNPGKTLPKALFYAVIFVVVAYLYPLLAG 315
Query: 249 TGALPSETAGEWTDGFFSVVGDRIGG 274
TGA+P + G+WTDG+F+ + +GG
Sbjct: 316 TGAVPLDR-GQWTDGYFADIAKLLGG 340
>Os03g0576900 Amino acid/polyamine transporter I family protein
Length = 550
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/265 (46%), Positives = 162/265 (61%), Gaps = 12/265 (4%)
Query: 15 LTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWSLPEALVTAELASAF 74
++++PL+ LIFY+VSGGPFGIEDSV+A G LL I GFL+ ++WS+PEAL+TAE+ + F
Sbjct: 102 VSIIPLIFLIFYEVSGGPFGIEDSVKAAG-PLLAIAGFLLFALIWSVPEALITAEMGTMF 160
Query: 75 PTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLRS-----GGGLVLSP 129
P N GYV WVS+A GP F G++KW SG +DNALYPVLFLDY++S GGGL
Sbjct: 161 PENGGYVVWVSSALGPFWGFQQGWAKWLSGVIDNALYPVLFLDYVKSSIPALGGGL---- 216
Query: 130 PXXXXXXXXXXXXXXXXNFRGLHLVGXXXXXXXXXXXXPFVALAVLAAPKIRPSRWLAVN 189
N+RGL +VG PF + ++A P+I PSRWL ++
Sbjct: 217 -PRTLAVLILTVALTYMNYRGLTIVGWVAVFLGVFSLLPFFVMGLIAIPRIEPSRWLEMD 275
Query: 190 VAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKXXXXXXXXXXXXYLIPLLAGT 249
+ V Y N++FWNLNYWD STLAGEVE P++T P+ YL PL+ T
Sbjct: 276 LGNVNWGLYLNTLFWNLNYWDSISTLAGEVENPKRTLPRALSYALVLVVGGYLYPLITCT 335
Query: 250 GALPSETAGEWTDGFFSVVGDRIGG 274
A+P WTDG+FS V +GG
Sbjct: 336 AAVPV-VREFWTDGYFSDVARILGG 359
>Os03g0375100 Amino acid/polyamine transporter I family protein
Length = 330
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 142/261 (54%), Gaps = 9/261 (3%)
Query: 11 RRRGLTVLPLVALIFYDVSGGPFGIEDSVRAGGGALLPILGFLVLPVLWSLPEALVTAEL 70
R LT+LPLV LI+++V+GGP+G E +VRA G L +LGFL P W +P +LVTAEL
Sbjct: 58 HRSKLTLLPLVFLIYFEVAGGPYGAERAVRAAG-PLFALLGFLAFPFAWGVPVSLVTAEL 116
Query: 71 ASAFPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLRSGGGLVLSPP 130
A+A P N G+V W AFGP A L+G K+ S ++ A +P L DYL V P
Sbjct: 117 AAALPGNGGFVVWADRAFGPLAGSLLGTWKYLSCVINLAAFPALVADYLGRVAPAVAVPG 176
Query: 131 XXXXXXXX--XXXXXXXXNFRGLHLVGXXXXXXXXXXXXPFVALAVLAAPKIRPSRWLA- 187
N GL +VG PFV + +AAP+ RP RW A
Sbjct: 177 SRARTGTVLGMTVFLSFLNLTGLSIVGWGAVALGFVSLAPFVLMTAMAAPRTRPRRWAAR 236
Query: 188 VNVAAVEPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPKXXXXXXXXXXXXYLIPLLA 247
V + R +FN++FWNLNYWD AST+AGEVE P +TFP+ YL+PL+A
Sbjct: 237 VKGRKRDWRLFFNTLFWNLNYWDSASTMAGEVERPERTFPRALAVAVVLIAVSYLLPLMA 296
Query: 248 GTGAL--PSETAGEWTDGFFS 266
GA P ET W +G+ +
Sbjct: 297 AIGATDAPPET---WENGYLA 314
>Os08g0525300
Length = 159
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 90/155 (58%)
Query: 74 FPTNAGYVAWVSAAFGPAAAFLVGFSKWASGTLDNALYPVLFLDYLRSGGGLVLSPPXXX 133
FP N GY+ WV++A GP F G+ KW SG +DN LYPVLFLDYL+SG +
Sbjct: 2 FPENGGYIVWVASALGPYWGFQQGWMKWLSGVIDNVLYPVLFLDYLKSGVPALGRGATRA 61
Query: 134 XXXXXXXXXXXXXNFRGLHLVGXXXXXXXXXXXXPFVALAVLAAPKIRPSRWLAVNVAAV 193
++RGL +VG PF + ++A P++RP+RWL +++ V
Sbjct: 62 FAVVGLMAVLTLLSYRGLTVVGWVAICLGVFSLLPFFVMGLIALPRLRPARWLVIDLHNV 121
Query: 194 EPRAYFNSMFWNLNYWDKASTLAGEVEEPRKTFPK 228
+ Y N++FWNLNYWD STLAGEV+ P KT PK
Sbjct: 122 DWNLYLNTLFWNLNYWDSISTLAGEVKNPGKTLPK 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,629,421
Number of extensions: 478883
Number of successful extensions: 1051
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1040
Number of HSP's successfully gapped: 5
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)