Os12g0580400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter I family protein.
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Os12g0580400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.71 | 0.335 | 8.89 | 0.583 | 1.16 | -1.02 | 0.407 | 0.263 | 0.249 | 15.8 | 9.999 | 101 | -- | -- |
| 50.48 | 0.331 | 8.89 | 0.577 | 1.11 | -1.05 | 0.175 | -- | 0.254 | 15.8 | 10 | 113 | -- | -- |
| 50.56 | 0.331 | 8.88 | 0.575 | 1.11 | -1.04 | -- | 0.144 | 0.265 | 15.7 | 9.994 | 116 | -- | -- |
| 50.32 | 0.33 | 8.89 | 0.58 | 1.06 | -1.08 | -- | -- | 0.265 | 15.7 | 9.91 | 128 | -- | -- |
| 63.78 | 0.372 | 8.89 | 0.507 | -- | -1.77 | -- | 0.00388 | 0.232 | -- | 6.247 | 252 | -- | -- |
| 65.29 | 0.379 | 8.87 | 0.579 | 2.12 | -- | 0.0884 | -- | 0.302 | 14.2 | -- | -- | -- | -- |
| 65.32 | 0.378 | 8.87 | 0.581 | 2.12 | -- | -- | -- | 0.302 | 14.2 | -- | -- | -- | -- |
| 63.77 | 0.372 | 8.89 | 0.502 | -- | -1.77 | -- | -- | 0.237 | -- | 6.23 | 251 | -- | -- |
| 58.96 | 0.358 | 8.9 | -- | 1.05 | -1.08 | -- | -- | 0.198 | 15.7 | 10.91 | 130 | -- | -- |
| 332.35 | 0.852 | 8.88 | 0.492 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 74.22 | 0.403 | 8.88 | -- | 2.11 | -- | -- | -- | 0.238 | 14.2 | -- | -- | -- | -- |
| 70.29 | 0.39 | 8.9 | -- | -- | -1.76 | -- | -- | 0.179 | -- | 5.517 | 251 | -- | -- |
| 338.74 | 0.859 | 8.9 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.15 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 2 | 45.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 3 | 45.57 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 4 | 46.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 7 | 46.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 11 | 46.44 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 25 | 47.18 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 20 |
| 29 | 47.39 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 40 | 47.70 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 45 | 47.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 54 | 48.06 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 57 | 48.13 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 60 | 48.19 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 69 | 48.36 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 14 |
| 75 | 48.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 4 |
| 88 | 48.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 92 | 48.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 94 | 48.68 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 97 | 48.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 109 | 48.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 117 | 48.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 122 | 48.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 124 | 48.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 127 | 48.95 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 128 | 48.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 129 | 48.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 130 | 48.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 131 | 48.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 142 | 49.14 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 152 | 49.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 5 |
| 155 | 49.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 174 | 49.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 200 | 49.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 225 | 49.84 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 20 |
| 228 | 49.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 231 | 49.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 261 | 50.13 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 265 | 50.14 | radiation | 1.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 270 | 50.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 319 | 50.40 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 320 | 50.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 337 | 50.53 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 338 | 50.54 | radiation | 1.0 | 90 | < th | dose independent | sin | 0 | NA |
| 359 | 50.62 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 360 | 50.63 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 12 |
| 389 | 50.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 4 |
| 390 | 50.73 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 4 |
| 391 | 50.73 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 4 |
| 394 | 50.73 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 4 |
| 395 | 50.73 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 4 |
| 400 | 50.73 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 20 |
| 402 | 50.73 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 404 | 50.73 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 409 | 50.74 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 4 |
| 422 | 50.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 4 |
| 431 | 50.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 449 | 50.79 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 20 |
| 450 | 50.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 3 |
| 451 | 50.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 467 | 50.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 468 | 50.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 469 | 50.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 472 | 50.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 473 | 50.84 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 479 | 50.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 487 | 50.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 489 | 50.86 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 4 |
| 506 | 50.95 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 534 | 51.05 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 555 | 51.11 | radiation | 1.0 | 90 | > th | dose independent | sin | 0 | NA |
| 565 | 51.15 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 566 | 51.15 | radiation | 10.0 | 90 | < th | dose dependent | no | NA | NA |
| 573 | 51.18 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 4 |
| 576 | 51.18 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 581 | 51.20 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 603 | 51.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 621 | 51.33 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 631 | 51.38 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 6 |
| 633 | 51.38 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 634 | 51.39 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 20 |
| 637 | 51.39 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 641 | 51.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 645 | 51.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 646 | 51.41 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 18 |
| 647 | 51.42 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 648 | 51.42 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 649 | 51.42 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 652 | 51.42 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 653 | 51.42 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 659 | 51.42 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 661 | 51.42 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 669 | 51.44 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 6 |
| 702 | 51.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 751 | 51.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 761 | 51.61 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 804 | 51.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 825 | 51.75 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 843 | 51.80 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 847 | 51.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 13 |
| 848 | 51.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 859 | 51.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 870 | 51.89 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 7 |
| 874 | 51.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 875 | 51.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 921 | 51.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
| 923 | 51.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 954 | 52.02 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 956 | 52.03 | radiation | 40.0 | 270 | < th | dose independent | rect. | 20 | 13 |