BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0579000 Os12g0579000|AK106536
(663 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0579000 Leo1-like protein family protein 930 0.0
Os07g0109600 Leo1-like protein family protein 669 0.0
Os03g0756500 342 7e-94
>Os12g0579000 Leo1-like protein family protein
Length = 663
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/663 (73%), Positives = 488/663 (73%)
Query: 1 MAGGDRERDVEEETRNQMMQNLFGDQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MAGGDRERDVEEETRNQMMQNLFGDQS
Sbjct: 1 MAGGDRERDVEEETRNQMMQNLFGDQSEEEEEDDDEAVDFVDEDDHPHPHQQQQQLRHQV 60
Query: 61 XXXXXXXXXXXXSGYHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRADLDQG 120
SGYHS HRADLDQG
Sbjct: 61 VDDDDDDDAHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHRADLDQG 120
Query: 121 ESDGEKVQSSPGELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDDYYAG 180
ESDGEKVQSSPGELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDDYYAG
Sbjct: 121 ESDGEKVQSSPGELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDDYYAG 180
Query: 181 RAHEDEEPRQTRKASSSPXXXXXXXXXXXXXFGESDEDEPAPYRDQQEIDEDSHRSPMED 240
RAHEDEEPRQTRKASSSP FGESDEDEPAPYRDQQEIDEDSHRSPMED
Sbjct: 181 RAHEDEEPRQTRKASSSPVEEERDQEVVRDVFGESDEDEPAPYRDQQEIDEDSHRSPMED 240
Query: 241 EGHYEKDLQPDDVVADEDMRYESDENRELKPKEKXXXXXXXXXXXXKQPPAQPERMNVIK 300
EGHYEKDLQPDDVVADEDMRYESDENRELKPKEK KQPPAQPERMNVIK
Sbjct: 241 EGHYEKDLQPDDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIK 300
Query: 301 VSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNAR 360
VSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNAR
Sbjct: 301 VSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNAR 360
Query: 361 IVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSS 420
IVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSS
Sbjct: 361 IVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSS 420
Query: 421 KSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRK 480
KSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRK
Sbjct: 421 KSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRK 480
Query: 481 YTQPARQRRQLSPGFXXXXXXXXXXXXHQYGSRRMPARSRFGDXXXXXXXXXRRIVSAKK 540
YTQPARQRRQLSPGF HQYGSRRMPARSRFGD RRIVSAKK
Sbjct: 481 YTQPARQRRQLSPGFLEDALDEDEEPDHQYGSRRMPARSRFGDELEAEALAERRIVSAKK 540
Query: 541 SSMGRNIPRKPSFPARPPRRQXXXXXXXXXXXXXXXXXXXXXXHSPTQGRXXXXXXXXXX 600
SSMGRNIPRKPSFPARPPRRQ HSPTQGR
Sbjct: 541 SSMGRNIPRKPSFPARPPRRQENEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEY 600
Query: 601 XXXXXXXXXXXXXXXXXPKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDS 660
PKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDS
Sbjct: 601 EEDVEEEAAMSDEEIEEPKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDS 660
Query: 661 DDE 663
DDE
Sbjct: 661 DDE 663
>Os07g0109600 Leo1-like protein family protein
Length = 476
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/476 (73%), Positives = 355/476 (74%), Gaps = 4/476 (0%)
Query: 1 MAGGDRERDVEEETRNQMMQNLFGDQSXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXX 57
MAGGDRERDVEEETRNQMMQNLFGDQS
Sbjct: 1 MAGGDRERDVEEETRNQMMQNLFGDQSEDEEDDDEAVEVVDEDDHPHPQQQQLLRHQVVD 60
Query: 58 XXXXXXXXXXXXXXXSGYHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRADL 117
SGYHS H+ADL
Sbjct: 61 DDDDEDDVRSEGHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHQADL 120
Query: 118 DQGESDGEKVQSSPG-ELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDD 176
DQGESDGEKVQSSP E SDRVMQNDAAGMDSED YQQ PVAS RRGVVASESEGSEDD
Sbjct: 121 DQGESDGEKVQSSPEREFSDRVMQNDAAGMDSEDGGYQQWPVASGRRGVVASESEGSEDD 180
Query: 177 YYAGRAHEDEEPRQTRKASSSPXXXXXXXXXXXXXFGESDEDEPAPYRDQQEIDEDSHRS 236
YYAGR HEDEEP QTRK SSP FGESDED PAPYRDQ EIDEDSHRS
Sbjct: 181 YYAGRGHEDEEPHQTRKTPSSPVEEERDHEVVRDVFGESDEDGPAPYRDQHEIDEDSHRS 240
Query: 237 PMEDEGHYEKDLQPDDVVADEDMRYESDENRELKPKEKXXXXXXXXXXXXKQPPAQPERM 296
PMEDEGHYEKDLQP+DVVADEDMRYESDENRELKPKEK KQPPAQP+RM
Sbjct: 241 PMEDEGHYEKDLQPEDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPDRM 300
Query: 297 NVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCE 356
NVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCE
Sbjct: 301 NVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCE 360
Query: 357 SNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPS 416
SNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPS
Sbjct: 361 SNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPS 420
Query: 417 SLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQR 472
SLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPE+VKQEKERALGQNIRAHSILQR
Sbjct: 421 SLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPEKVKQEKERALGQNIRAHSILQR 476
>Os03g0756500
Length = 613
Score = 342 bits (876), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 221/481 (45%), Positives = 276/481 (57%), Gaps = 65/481 (13%)
Query: 212 FGESDEDEPAPYRDQQEIDEDSHRSPMEDEGHYEKDLQPDDVVADEDMRYESDENRELKP 271
F ++DED APY + + ++ +H S M DEG YE +L P+D+V DED YE DEN E +
Sbjct: 169 FDDNDEDGLAPYGSRDD-NKHAHESLMNDEGPYE-ELLPEDMV-DEDKHYEPDENIEHEL 225
Query: 272 KEKXXXXXXXXXXXXKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTK 331
K+K PP QP+RMNVIKVSNIMG++PKPFDP+TYVEED TDESG++
Sbjct: 226 KDKPLGPPLNLVVPRMLPPGQPDRMNVIKVSNIMGVNPKPFDPETYVEEDAL-TDESGSR 284
Query: 332 KRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSH 391
K+IRLEDNIVRW+ VKNA+GT S ESNAR VKWKDG++QLLIGNEVLDIS
Sbjct: 285 KKIRLEDNIVRWKIVKNADGTESRESNARFVKWKDGSIQLLIGNEVLDIS---------- 334
Query: 392 LFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPER 451
G++QSQGRLL+KMRFMPSSLSS+SHRLLTALVDSQNKKT+KMQ WI+ DPE+
Sbjct: 335 -------GLMQSQGRLLQKMRFMPSSLSSRSHRLLTALVDSQNKKTIKMQTWIDENDPEK 387
Query: 452 VKQEKER-----------------------------ALGQNIRAHSILQRKREKVSRKYT 482
VK+E+E+ A G+NIRA S LQRKRE+V RKY+
Sbjct: 388 VKEEREKPTSSMCCFFRLLQHSSVTSSRTGKHMQTIAEGENIRASSSLQRKREQVKRKYS 447
Query: 483 QPARQRRQLSPGFXXXXXXXXXXXXHQYGSRRMPARSRFGDXXXXXXXXXRRIVSAKKSS 542
QP R+RR+L+PGF Y RR P + F D R + +AKK++
Sbjct: 448 QPLRKRRKLTPGFLEDALEEDEAPGVGYNQRRGPGHAHFEDSLEAEALSKRHVTNAKKAN 507
Query: 543 MGRNIPRKPSFPARPPRRQXXXXXXXXXXXXXXXXXXXXXXHSPTQGRXXXXXXXXXXXX 602
+G+ +P PS P+ Q +SPT GR
Sbjct: 508 VGKAVP-SPSV----PKHQVNEYSKSESEESEYETDVEDIDNSPTNGREDDMDEEEEDPE 562
Query: 603 XXXXXXXXXXXXXXXPKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDSDD 662
+ +E RK +SDD+SPPRK Q ++RRK VVFDSDD
Sbjct: 563 EVIGDTSMSDENNEEQEHVKE---------RKGFNSDDESPPRK-QPLNRRKTVVFDSDD 612
Query: 663 E 663
E
Sbjct: 613 E 613
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,061,574
Number of extensions: 769252
Number of successful extensions: 2670
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2659
Number of HSP's successfully gapped: 3
Length of query: 663
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 556
Effective length of database: 11,448,903
Effective search space: 6365590068
Effective search space used: 6365590068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)