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Os12g0579000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leo1-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0153) R2 : 0.0856
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.211 (0.0323) R2dN8 : 0.111 R2N8 : 0.0856
σ : 0.289
deviance : 38.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.15 0.195 11.1 0.565 0.346 -0.759 0.335 -0.426 0.21 3.32 22.3 97 -- --
17.31 0.194 11.1 0.535 0.342 -0.653 0.209 -- 0.206 3.47 22.57 111 -- --
17.35 0.194 11.1 0.539 0.35 -0.723 -- -0.258 0.202 3.71 22.3 133 -- --
17.4 0.194 11.1 0.526 0.345 -0.656 -- -- 0.201 3.76 22.53 120 -- --
23.22 0.224 11.1 0.536 -- -0.584 -- -0.16 0.204 -- 22.63 1499 -- --
21.98 0.22 11.1 0.662 0.28 -- 0.134 -- 0.279 4.07 -- -- -- --
22.01 0.22 11.1 0.66 0.282 -- -- -- 0.278 4.29 -- -- -- --
23.24 0.225 11.1 0.521 -- -0.55 -- -- 0.202 -- 22.7 1515 -- --
23.98 0.228 11.2 -- 0.347 -0.817 -- -- 0.111 3.89 23.13 207 -- --
26.31 0.24 11.1 0.672 -- -- -- -- 0.285 -- -- -- -- --
33.51 0.271 11.1 -- 0.295 -- -- -- 0.204 4.24 -- -- -- --
25.31 0.234 11.2 -- -- -0.599 -- -- 0.0744 -- 21.33 47520 -- --
38.21 0.289 11.1 -- -- -- -- -- 0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.97 temperature 20 10 > th dose independent rect. 19 10
2 16.08 temperature 20 90 > th dose independent rect. 18 11
4 16.19 temperature 20 270 > th dose independent rect. 16 11
12 16.45 temperature 15 270 > th dose dependent rect. 17 10
16 16.68 temperature 20 90 > th dose independent sin 11 NA
17 16.70 temperature 20 10 > th dose independent sin 10 NA
41 16.88 temperature 15 270 > th dose dependent sin 12 NA
44 16.90 temperature 20 720 > th dose independent rect. 8 17
55 16.96 temperature 20 90 > th dose independent rect. 7 23
66 17.02 temperature 30 270 < th dose dependent rect. 17 14
70 17.04 temperature 15 10 > th dose dependent rect. 19 10
90 17.16 temperature 20 10 > th dose independent rect. 7 23
108 17.22 temperature 25 270 < th dose dependent rect. 10 20
111 17.23 temperature 20 720 > th dose independent sin 18 NA
118 17.24 temperature 20 270 < th dose independent rect. 11 18
123 17.24 temperature 25 90 < th dose dependent rect. 17 18
125 17.25 temperature 20 90 > th dose independent rect. 23 14
126 17.25 temperature 25 270 < th dose dependent sin 13 NA
132 17.26 temperature 25 90 < th dose dependent rect. 15 20
138 17.28 temperature 20 270 < th dose independent rect. 15 14
139 17.28 temperature 20 10 > th dose independent rect. 19 19
145 17.29 temperature 20 270 < th dose independent sin 13 NA
171 17.33 temperature 20 10 > th dose independent rect. 8 21
174 17.33 temperature 20 90 > th dose independent rect. 17 23
187 17.35 temperature 20 90 < th dose independent rect. 11 22
196 17.36 temperature 25 90 < th dose dependent rect. 19 16
200 17.37 temperature 20 10 > th dose independent rect. 17 23
205 17.38 temperature 20 10 < th dose independent rect. 18 14
210 17.39 temperature 20 90 < th dose independent sin 11 NA
214 17.39 temperature 20 720 < th dose independent rect. 9 15
215 17.39 temperature 20 10 < th dose independent rect. 16 16
224 17.40 temperature 20 10 < th dose independent sin 10 NA
235 17.40 temperature 20 90 < th dose independent rect. 15 20
238 17.41 temperature 20 10 > th dose independent no NA NA
239 17.41 temperature 20 90 > th dose independent no NA NA
256 17.42 temperature 20 90 < th dose independent rect. 17 18
258 17.42 temperature 20 270 > th dose independent rect. 15 22
268 17.43 temperature 20 10 < th dose independent rect. 15 21
278 17.44 temperature 20 90 < th dose independent rect. 17 16
279 17.44 temperature 20 90 < th dose independent rect. 15 18
355 17.49 temperature 20 90 > th dose independent rect. 19 18
360 17.49 temperature 25 720 < th dose dependent rect. 17 6
377 17.50 temperature 20 10 > th dose independent rect. 23 23
384 17.51 temperature 20 270 > th dose independent rect. 21 14
437 17.53 temperature 20 10 < th dose independent rect. 11 22
441 17.53 temperature 20 90 < th dose independent rect. 17 23
451 17.54 temperature 20 90 < th dose independent no NA NA
494 17.55 temperature 20 90 < th dose independent rect. 5 23
546 17.57 temperature 20 90 < th dose independent rect. 21 23
580 17.58 temperature 25 720 < th dose dependent rect. 9 15
629 17.60 temperature 20 10 < th dose independent rect. 7 23
630 17.60 temperature 20 10 < th dose independent rect. 17 23
631 17.60 temperature 20 10 < th dose independent rect. 19 23
632 17.60 temperature 20 10 < th dose independent rect. 21 23
635 17.60 temperature 25 720 < th dose dependent rect. 19 2
642 17.61 temperature 20 10 < th dose independent no NA NA
665 17.62 temperature 20 90 < th dose independent rect. 1 23
666 17.62 temperature 20 10 < th dose independent rect. 5 23
688 17.63 temperature 20 10 < th dose independent rect. 3 23
689 17.63 temperature 20 90 < th dose independent rect. 3 23
755 17.66 temperature 20 10 < th dose independent rect. 23 23
791 17.67 temperature 20 10 < th dose independent rect. 1 23
800 17.67 temperature 20 10 < th dose dependent rect. 12 20
808 17.68 temperature 20 10 > th dose independent rect. 23 14
812 17.68 temperature 20 10 > th dose independent rect. 21 16
970 17.73 temperature 20 720 < th dose independent sin 19 NA