BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0579000 Os12g0579000|AK106536
         (663 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61150.1  | chr5:24603846-24607528 REVERSE LENGTH=626          327   1e-89

>AT5G61150.1 | chr5:24603846-24607528 REVERSE LENGTH=626
          Length = 625

 Score =  327 bits (838), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 316/571 (55%), Gaps = 40/571 (7%)

Query: 115 ADLDQGESDGEKVQSSPGELSDRVMQNDAAGMDSED--EAYQQRPVASRRRGVVASESEG 172
            +LD GES+GE+ QSS  + +D   +++A   DS++  E +  R    RR+ VV S SE 
Sbjct: 73  VELDPGESEGEREQSS--QEADPQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGSER 130

Query: 173 SEDDYYAGRAHEDEEPRQTRKASSSPXXXXXXXXXXX-----XXFGESDEDEPAPYRDQQ 227
           S + +Y     EDEE  QTR   S                    FG SD+++   Y  + 
Sbjct: 131 SGEKHYES---EDEEVDQTRSPRSPSEEKEEVQVAQSDVNIRNVFGSSDDEDAEEYV-RN 186

Query: 228 EIDEDSHRSPMEDEGHYEKDLQPDDVVAD-----EDMRYESD-ENRELKPKEKXXXXXXX 281
           ++++D HRSP+EDE   EKDL+PDD+V D     ED +YES+ E+ E + +E+       
Sbjct: 187 DVEQDEHRSPIEDEEGSEKDLRPDDMVLDDIIPEEDPQYESEAEHVEARYRERPVGPPLE 246

Query: 282 XXXXXKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIV 341
                + PP  P +MN+IKVSNIMGIDPKPFD KT+VEED F+TDE G K RIRL++NIV
Sbjct: 247 VEVPFRPPPGDPVKMNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGAKNRIRLDNNIV 306

Query: 342 RWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVL 401
           R R VK+ +G T  ESNAR V+W DG++QLLIGNEVL+I+  +A  DQ+HLF+++ KG+L
Sbjct: 307 RHRFVKSRDGKTYSESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKGIL 366

Query: 402 QSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALG 461
           QSQGR+L+KMRF PSSL+S SHRLLTA+V+S+ KK  K++  +   DPER K+++E+A  
Sbjct: 367 QSQGRILKKMRFTPSSLTSNSHRLLTAIVESRQKKAFKVKNCVTDIDPEREKEKREKAES 426

Query: 462 QNIRAHSILQRKREKVSRKYTQPARQRRQLSPGFXXXXXXXXXXXXHQYGSRRMPARSRF 521
           QN++A + L + REK+ RKY  P  +RRQLS G+              Y S R      +
Sbjct: 427 QNLKASTKLSQAREKIKRKYPLPV-ERRQLSTGY---LEDALDEDDEDYRSNRG-----Y 477

Query: 522 GDXXXXXXXXXRRIVSAKKSSMGRNIPRKPSFP-ARPPRRQXXXXXXXXXXXXXXXXXXX 580
            +         RRI++AKKS  G  IP + S   ARP RRQ                   
Sbjct: 478 EEDLEAEAQRERRILNAKKSHKG--IPGRSSMTSARPSRRQMEYSESEREESEYETEEEE 535

Query: 581 XXXHSPTQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXPKR--------RRESGGASASQR 632
               SP +GR                                      R E     + ++
Sbjct: 536 EEK-SPARGRGKDSEDEYEEDAEEDEEERGKSNRYSDEDEEEEEVAGGRAEKDHRGSGRK 594

Query: 633 RKEIDSDDDSPPRKQQAVHRRKAVVFDSDDE 663
           RK I+SD++  P ++   HRRKAV+ DSD++
Sbjct: 595 RKGIESDEEESPPRKAPTHRRKAVIDDSDED 625



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,645,096
Number of extensions: 464301
Number of successful extensions: 1732
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1730
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 558
Effective length of database: 8,227,889
Effective search space: 4591162062
Effective search space used: 4591162062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)