BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0568000 Os12g0568000|AK106437
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0568000 Conserved hypothetical protein 822 0.0
Os04g0608700 280 1e-75
Os07g0649700 Zinc finger, CCHC-type domain containing protein 278 6e-75
Os11g0672500 147 2e-35
Os09g0536100 146 3e-35
Os10g0202600 139 3e-33
Os09g0545100 124 1e-28
Os10g0159400 100 3e-21
Os04g0563500 RNA-directed DNA polymerase (Reverse transcrip... 89 4e-18
Os08g0198800 Conserved hypothetical protein 75 1e-13
Os04g0582300 67 2e-11
>Os12g0568000 Conserved hypothetical protein
Length = 426
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/426 (95%), Positives = 407/426 (95%)
Query: 1 MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ 60
MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ
Sbjct: 1 MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ 60
Query: 61 PALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIA 120
PALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIA
Sbjct: 61 PALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIA 120
Query: 121 FKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLT 180
FKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLT
Sbjct: 121 FKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLT 180
Query: 181 MFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEI 240
MFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEI
Sbjct: 181 MFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEI 240
Query: 241 IDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQXXXXXXXXXXXXXXX 300
IDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQ
Sbjct: 241 IDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGRPFGGASGFAGG 300
Query: 301 XXXXTWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDTIEEHSSGEPGN 360
TWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDTIEEHSSGEPGN
Sbjct: 301 LPGRTWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDTIEEHSSGEPGN 360
Query: 361 RMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGKDVLATGGEVAL 420
RMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGKDVLATGGEVAL
Sbjct: 361 RMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGKDVLATGGEVAL 420
Query: 421 VARSDA 426
VARSDA
Sbjct: 421 VARSDA 426
>Os04g0608700
Length = 1368
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 188/285 (65%), Gaps = 4/285 (1%)
Query: 1 MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ 60
+ +QICA P + ++++R G+ + E GR +SWT M E ++ L+A+VL +
Sbjct: 191 LGGYQICAATPPQFVEKYRIGEPDSWLERGRVVLSWTSGMERHERYLQELSLMASVLKGR 250
Query: 61 PALSPRDLVAVI-VDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPI 119
P +SP +L I + G+ +FRVEVT PED+LI FR+ REK+ VL SK +F P+
Sbjct: 251 PPVSPAELAETIELHTGVQQRYFRVEVTRPEDFLISFRNQREKEAVLRCSKALFCNEVPV 310
Query: 120 AFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVL 179
+FK WNR A ++ FQFFTK+SL+GLP HAW+EEAM +L+ L G+L EL+P ADAR L
Sbjct: 311 SFKPWNRCCWAEASAFQFFTKISLDGLPPHAWEEEAMHKLVNSLDGQLAELIPAADARCL 370
Query: 180 TMFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEE 239
+FAW KNPS +P L+VEIPER G W R S P P K LTY +I+H+EE
Sbjct: 371 GLFAWFKNPSDLPHHLDVEIPERPAAG--RW-REGTSATPPSPPREKPALTYPVIIHVEE 427
Query: 240 IIDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSK 284
+IDPTPLH P ++ ++ DD+DV R+ TFSCWAGR DG GPW ++
Sbjct: 428 VIDPTPLHTPPTSFDDNSDDEDVTRRNTFSCWAGRYDGAGPWPTE 472
>Os07g0649700 Zinc finger, CCHC-type domain containing protein
Length = 1509
Score = 278 bits (711), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 189/285 (66%), Gaps = 4/285 (1%)
Query: 1 MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ 60
+ +QICA P + ++++R G+ + RPE GR +SWT M E ++ L+A+VL +
Sbjct: 167 LGGYQICAATPPQFVEKYRIGEPDSRPERGRVVLSWTSGMERHERYLQELSLMASVLKGR 226
Query: 61 PALSPRDLV-AVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPI 119
P +SP +L A+ + G+ +FRVEVT PED+LI FR+ REK+ VL SK +F P+
Sbjct: 227 PPVSPAELAEAIELHTGVQQRYFRVEVTRPEDFLISFRNQREKEAVLRCSKALFCNEVPV 286
Query: 120 AFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVL 179
+FK WN A ++ FQFFTK+SL+GLP HAW+EEAM +L+ L G+L EL+P ADAR L
Sbjct: 287 SFKPWNICCWAEASAFQFFTKISLDGLPPHAWEEEAMHKLVNSLDGQLAELIPAADARCL 346
Query: 180 TMFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEE 239
+FAW KNPS + L+VEIPER G W R S P P K LTY +I+H+EE
Sbjct: 347 GLFAWFKNPSDLSHHLDVEIPERPAAGR--W-REGTSATPPSPPREKPALTYPVIIHVEE 403
Query: 240 IIDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSK 284
+IDPTPLH P ++ ++ DD+DV R+ TFSCWAGR DG GPW ++
Sbjct: 404 VIDPTPLHTPPTSFDDNSDDEDVTRRNTFSCWAGRYDGAGPWPTE 448
>Os11g0672500
Length = 935
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 147/278 (52%), Gaps = 20/278 (7%)
Query: 15 MKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQPALSPRDLVAVI-V 73
M+ GD +RP +G +SWTP M E E + L+A+VL + +SP LV +
Sbjct: 202 MENLGAGDPFLRPAAGHGVLSWTPGMAEVERRLLGRALVASVLSGRKEVSPARLVEELGR 261
Query: 74 DCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASST 133
CGIL ++ RVEVT P D+LI F + VL +S ++ GA I+F+ W+R + A S+
Sbjct: 262 ACGILHSNVRVEVTRPSDFLIYFARGEDCTTVLNQSGRLTVAGAKISFRRWHRSVHARSS 321
Query: 134 RFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPT 193
+ +L++EGLP HA + +A+ Q + ++ + +E P DA + + AW N S +P
Sbjct: 322 KMAHVVRLAIEGLPAHAVEVDAIKQFLNKIDCQFIEWFEPVDACMTEVLAWSSNSSLIPK 381
Query: 194 TLEVEIPERAG---GGPPC-----WERMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTP 245
+EIPE G P +E + P P K LT+++++H+ E++DP
Sbjct: 382 EFALEIPEPMMEWWGEPEVDDANMFEALVAEA-PPAPPSEKRCLTFDLLLHLLEVVDPM- 439
Query: 246 LHVPLSTASNDEDDDDV---PRQVTFSCWAGRIDGTGP 280
A+ E DDV PR+ T + GRIDGTGP
Sbjct: 440 ------QATEGESSDDVFGPPRRRTHRTYLGRIDGTGP 471
>Os09g0536100
Length = 1444
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 143/270 (52%), Gaps = 12/270 (4%)
Query: 21 GDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQPALSPRDLVAVI-VDCGILP 79
GD GR +SWTP M E ++ L+ +VL + +SP +VA + C +
Sbjct: 318 GDKEHPQPGGRGVLSWTPGMAAIEQQMRKRALVTSVLSGRREVSPAMVVAALGRRCRVPS 377
Query: 80 AHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASSTRFQFFT 139
R+EVT P D+LI FR + VLG S + +GA I+F+ W+R + A ++ F
Sbjct: 378 EDVRIEVTRPSDFLISFRREEDCASVLGWSGRFSVEGASISFRHWHRSVHARRSKLLFVV 437
Query: 140 KLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPTTLEVEI 199
KL++EGLP HA + EA+ Q + ++ + +EL P DA + + AW +PS +P ++I
Sbjct: 438 KLAVEGLPAHALEFEAIKQFLNKIDCQFIELFLPVDACMTEVLAWSVDPSKIPKEFTLDI 497
Query: 200 PE--RAGGGPPCWE-----RMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTPLHVPLST 252
PE + PP E S P P+ K L++++++H+ E++D P+ L +
Sbjct: 498 PEPMQEWWMPPVMEDPDIHEPLVSQTPPAPPIEKRCLSFDLLIHVLEVVD--PVQQLLDS 555
Query: 253 ASND--EDDDDVPRQVTFSCWAGRIDGTGP 280
+D DD + R+ + + GRIDGTGP
Sbjct: 556 PPDDPYNDDREALRRCAYGTFLGRIDGTGP 585
>Os10g0202600
Length = 963
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 1 MASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQ 60
MA FQIC +P M+E+ TG+ +RP G C +SWT M EA Q L+A+VL +
Sbjct: 205 MAGFQICTARPHEYMEEFWTGEPELRPAIGHCVLSWTAGMERNEAWLNQHTLMASVLKTR 264
Query: 61 PALSPRDL-VAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPI 119
P++S +L VA++ G+ + RV+VT ED+L+ FR+ R+++ V +S +++ Q P+
Sbjct: 265 PSVSSGELLVAIVQQAGVREENLRVDVTHTEDFLLSFRTLRDRNSVFRRSHEIYVQEVPV 324
Query: 120 AFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAM 156
+FK W+RR A S+ +FFTK+SL+GLP H W+ E +
Sbjct: 325 SFKLWSRRSWADSSDLKFFTKISLDGLPAHLWERETV 361
>Os09g0545100
Length = 1276
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 138/262 (52%), Gaps = 22/262 (8%)
Query: 30 GRCTISWTPRMVETEAIFEQKVLLATVLGNQPALSPRDLVAVIV-DCGILPAHFRVEVTT 88
G +SWTPRM E L+A + G Q +SP +V + CG+L + VEVT
Sbjct: 15 GGGVLSWTPRMSAIEQNLRGHALVAVLSGRQ-EVSPAMVVEELRRSCGVLHDNVCVEVTR 73
Query: 89 PEDYLIVFRSAREKDW--VLGKSKQVFFQGAPIAFKSWNRRLLASSTRFQFFTKLSLEGL 146
P D+LI F ARE+D VL S + GA I F+ W+R + A ST+ + +L++EGL
Sbjct: 74 PSDFLISF--AREEDCTAVLDLSGCLAAAGARITFRRWHRAIHARSTKMRHIVRLAIEGL 131
Query: 147 PQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPTTLEVEIPERAG-- 204
P HA + E + QL+ ++ + +E PP DA ++ NPSA+P ++IPE
Sbjct: 132 PPHAAEPEELKQLLNKVDCQFIESFPPNDACMMEAV----NPSAIPKEFALDIPEPMQEW 187
Query: 205 ------GGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTPLHVPLSTASNDED 258
P E + P P K LT+++++HI E++D L P +S+D D
Sbjct: 188 WNEPETDNPDMIEVLLAE-GPPAPPSEKRCLTFDLLLHIMEVVD--SLQEPREGSSSD-D 243
Query: 259 DDDVPRQVTFSCWAGRIDGTGP 280
+ PR+ T + + GRIDGTGP
Sbjct: 244 NFAPPRRRTHNTFLGRIDGTGP 265
>Os10g0159400
Length = 548
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 53 LATVLGNQPALSPRDLVAVIV-DCGILPAHFRVEVTTPEDYLIVFRSAREKDW--VLGKS 109
L VL + +SP +V + CG+L + RVEVT P D+LI F RE+D VL S
Sbjct: 18 LVVVLSGRQEVSPAMVVEELRRSCGVLYDNVRVEVTRPSDFLISF--TREEDCMAVLDLS 75
Query: 110 KQVFFQGAPIAFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVE 169
++ GA I F+ W+R + A ST+ + +L++EGLP HA + E + QL+ ++ + +E
Sbjct: 76 GRLAVAGARITFRRWHRAIHARSTKMRHIVRLAIEGLPPHAAEPEELKQLLNKVDCQFIE 135
Query: 170 LVPPADARVLTMFAWLKNPSAVPTTLEVEIPE 201
PP DA + + W NPSA+P ++IPE
Sbjct: 136 SFPPNDACMTEVLPWAVNPSAIPKEFALDIPE 167
>Os04g0563500 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 1453
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 11/151 (7%)
Query: 139 TKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPTTLEVE 198
+L++EGLP HA + EA+ QL+ ++ + +EL P DA +L + AW +PS +P ++
Sbjct: 267 VELAVEGLPAHAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILD 326
Query: 199 IPE--------RAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTPLHVPL 250
IPE A P +E + S P P K LT+++++H+ E++DP +P
Sbjct: 327 IPEPMQEWWMPPATDDPDMFELLV-SQSPPAPPTEKKCLTFDLLLHLREVVDPV-RQLPD 384
Query: 251 STASND-EDDDDVPRQVTFSCWAGRIDGTGP 280
S + + DD + PR+ T++ + GRIDG+GP
Sbjct: 385 SPSYDPFLDDREAPRRRTYNAFLGRIDGSGP 415
>Os08g0198800 Conserved hypothetical protein
Length = 475
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 76 GILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASSTRF 135
+ P F V PED+L+ F+S D V + + + + W+R+L A
Sbjct: 37 SLSPHSFSVRRFFPEDFLVTFQSDEIFDRV-ARRRSIPLGQFRLLVAPWSRQLHAREGSM 95
Query: 136 QFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVP----PADARVLTMFAWLKNPSAV 191
F +L LEG+P HAWDE A ++ ++ P +D V ++AW +P+++
Sbjct: 96 LFRVRLHLEGIPGHAWDEATAAAVLGS-SCRIISCDPVSSSASDMAVFKLYAWTSDPASI 154
Query: 192 PTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHI---EEIIDPTPLHV 248
P + I E GGP + P+ + L Y +++H+ E+ I P ++
Sbjct: 155 PKEKWLRIVE--DGGP---------VVTPQGTCER-YLDYVVLIHLTAMEDHISPPEPYL 202
Query: 249 PLSTA-------SNDEDDDDVPRQVTFSCWAGRIDGTGP 280
P + + S+D+ DD PR+ F GR DG+ P
Sbjct: 203 PFAPSSGDSGRPSSDDSDDGPPRRHFFHTSRGRRDGSPP 241
>Os04g0582300
Length = 414
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 16/239 (6%)
Query: 19 RTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQPA-LSPRDLVAVIVD-CG 76
+ GD + RPE TP E E + + PA ++PRD+ A+ +
Sbjct: 3 KLGDPSTRPEEEYFIP--TPHATEVELKDWESTAIIPWAAKAPASITPRDVEAIFKEEFH 60
Query: 77 ILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASSTRFQ 136
+ A V PE +LI F R L K V G + + W A
Sbjct: 61 LREADVFVSRHHPEAFLIKFEHQRHCVEALRKG-FVKRHGVELHYVKWRSLKSALGVALM 119
Query: 137 FFTKLSLEGLPQHAWDEEAMAQLI-RELGGELVE--LVPPADARVLTMFAWLKNPSAVPT 193
F +L L+G+P+HAW+ + + + + + E +E L+ P D R ++++AW NPS++P
Sbjct: 120 FRVRLYLDGIPRHAWEADIVERTVAKTCALESIETSLIHPPDTRWISVWAWTGNPSSIPK 179
Query: 194 TLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCT--LTYNIIVHIEEIIDPTPLHVPL 250
+ + G P G + PL + + Y + VH++EI D T V L
Sbjct: 180 RIWLIFTNSTRGKKP------GLVSFSDKPLERWQHGVKYCVYVHLKEIHDYTSATVTL 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,006,345
Number of extensions: 733153
Number of successful extensions: 2068
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2049
Number of HSP's successfully gapped: 16
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)