Os04g0608700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0608700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 306.1 | 0.822 | 7.23 | -1.49 | 0.5 | 0.899 | 2 | 3.23 | -1.06 | 8.79 | 998.2 | 2918 | -- | -- |
| 311.27 | 0.822 | 7.25 | -1.59 | 0.49 | 1.42 | 2.12 | -- | -1.05 | 8.7 | 998.5 | 2500 | -- | -- |
| 317.44 | 0.83 | 7.24 | -1.42 | 0.494 | 0.982 | -- | 4.33 | -1.07 | 9.81 | 997.8 | 2792 | -- | -- |
| 325.18 | 0.84 | 7.25 | -1.52 | 0.483 | 1.38 | -- | -- | -1.04 | 9.56 | 998.6 | 2500 | -- | -- |
| 329.84 | 0.846 | 7.25 | -1.4 | -- | 1.46 | -- | 5.09 | -1.05 | -- | 997.7 | 2813 | -- | -- |
| 340.29 | 0.865 | 7.27 | -1.44 | 0.496 | -- | 1.98 | -- | -1.13 | 8.8 | -- | -- | -- | -- |
| 352.59 | 0.879 | 7.27 | -1.37 | 0.494 | -- | -- | -- | -1.12 | 9.73 | -- | -- | -- | -- |
| 338.98 | 0.858 | 7.27 | -1.52 | -- | 1.39 | -- | -- | -1.04 | -- | 998.5 | 2504 | -- | -- |
| 383.79 | 0.912 | 7.22 | -- | 0.481 | 1.34 | -- | -- | -0.895 | 9.6 | 997.6 | 2551 | -- | -- |
| 367.09 | 0.895 | 7.28 | -1.37 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 401.96 | 0.938 | 7.24 | -- | 0.498 | -- | -- | -- | -0.972 | 9.93 | -- | -- | -- | -- |
| 397.62 | 0.929 | 7.23 | -- | -- | 1.35 | -- | -- | -0.901 | -- | 997.7 | 2564 | -- | -- |
| 416.83 | 0.953 | 7.25 | -- | -- | -- | -- | -- | -0.971 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 301.20 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 4 | 302.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 9 |
| 6 | 302.57 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 21 | 303.84 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 44 | 305.10 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 46 | 305.12 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 47 | 305.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 68 | 305.67 | temperature | 25.0 | 720 | > th | dose independent | rect. | 2 | 1 |
| 95 | 306.18 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 108 | 306.44 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 120 | 306.53 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 5 |
| 161 | 307.19 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 180 | 307.55 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 184 | 307.58 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 229 | 307.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 263 | 308.37 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 276 | 308.59 | temperature | 25.0 | 720 | < th | dose independent | sin | 11 | NA |
| 342 | 309.23 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 347 | 309.29 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 375 | 309.44 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 395 | 309.57 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 441 | 309.84 | temperature | 25.0 | 720 | > th | dose independent | sin | 11 | NA |
| 463 | 310.06 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 468 | 310.11 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 471 | 310.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 486 | 310.18 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 494 | 310.26 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 495 | 310.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 496 | 310.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 498 | 310.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 512 | 310.35 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 523 | 310.43 | atmosphere | 1000.0 | 1440 | < th | dose dependent | sin | 8 | NA |
| 578 | 310.76 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 580 | 310.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 661 | 311.20 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 665 | 311.21 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 4 | 7 |
| 666 | 311.22 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 684 | 311.31 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 745 | 311.61 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 792 | 311.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 797 | 311.82 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 820 | 311.89 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 825 | 311.90 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 954 | 312.35 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 961 | 312.37 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 973 | 312.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 998 | 312.43 | wind | 9.0 | 14400 | > th | dose dependent | sin | 9 | NA |