BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0608700 Os04g0608700|Os04g0608700
         (1368 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24255.1  | chr3:8789471-8793208 FORWARD LENGTH=747             58   4e-08
AT4G20520.1  | chr4:11045912-11047716 FORWARD LENGTH=377           58   4e-08
ATMG01250.1  | chrM:310514-310882 FORWARD LENGTH=123               54   6e-07

>AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747
          Length = 746

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query: 1292 FPITYLGLPLSLRRPTKAEVQPILDQLSKKVAGWKPKLLSPDGRLRLIKSVLTALPVHFM 1351
             P+ YLGLPL  ++ T ++  P+++++  ++  W  + LS  GRL+LI SV+ +L   +M
Sbjct: 23   LPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 1352 FVLVLPKWAIKEFNKKC 1368
                LP   IKE +  C
Sbjct: 83   SAFRLPSACIKEIDSIC 99



>AT4G20520.1 | chr4:11045912-11047716 FORWARD LENGTH=377
          Length = 376

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 1073 LASRLAPRMGDLVAENQTAFIRGRSIHENFIFVRGLALQFHRRK--KPMILLKLDITKAF 1130
            +  RL P M +L+   Q +FI GR   +N +FV+       R+K  K  +LLKLD+ KA+
Sbjct: 1    MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 1131 DTVSWCFLLNLLRNRGFGSRWRSWIA 1156
            D + W +L + L + GF   W   IA
Sbjct: 61   DRIRWDYLEDTLISAGFPEVWLPEIA 86



>ATMG01250.1 | chrM:310514-310882 FORWARD LENGTH=123
          Length = 122

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 1167 LLNGHESDSFKPARGLRQGNPLSPLLFVLVMDALQGLLAKATSWGLLAKLDTRRSIP--N 1224
            ++NG       P+RGLRQG+PLSP LF+L  + L GL  +A   G L  +    + P  N
Sbjct: 13   IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 1225 TSIYADDT 1232
              ++ADDT
Sbjct: 73   HLLFADDT 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,649,020
Number of extensions: 1209013
Number of successful extensions: 3324
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3323
Number of HSP's successfully gapped: 3
Length of query: 1368
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1257
Effective length of database: 8,063,393
Effective search space: 10135685001
Effective search space used: 10135685001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)