FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0568000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0359) R2 : 0.154
β1 : 0.289 (0.132) R2dD : 0.00934 R2D : 0.00664
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.52 (0.523) R2dE : 0.0885 R2E : 0.0503
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.61 (1.39) R2dD*E : 0.0929 R2D*E : 0.0498
γ1 : -0.0886 (0.0766) R2dN8 : 0.00332 R2N8 : 0.00554
σ : 0.671
deviance : 207.6
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1015
memory length : 1441
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.08
open length of G : 7.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.17 0.675 2.98 0.288 0.164 -3.56 0.0181 9.69 -0.0881 1.2 1015 1441 5.13 7.01
225.63 0.7 2.98 0.232 0.124 -2.89 0.149 -- -0.0968 1.18 1015 1442 4.98 7.02
206.17 0.669 2.98 0.287 0.164 -3.56 -- 9.7 -0.0882 1.25 1015 1440 5.12 7.03
225.34 0.699 2.97 0.239 0.144 -2.8 -- -- -0.095 2.79 1015 1443 4.87 7.32
207.6 0.671 2.98 0.289 -- -3.52 -- 9.61 -0.0886 -- 1015 1441 5.08 7.05
241.02 0.728 2.98 0.23 0.133 -- 0.306 -- -0.115 24 -- -- -- --
241.24 0.727 2.98 0.216 0.144 -- -- -- -0.118 1.6 -- -- -- --
226.5 0.701 2.98 0.235 -- -2.77 -- -- -0.0957 -- 1015 1444 4.86 7.28
226.69 0.701 2.97 -- 0.153 -2.79 -- -- -0.113 3.56 1015 1444 4.9 7.25
242.52 0.728 2.98 0.222 -- -- -- -- -0.115 -- -- -- -- --
242.48 0.728 2.99 -- 0.148 -- -- -- -0.142 1.64 -- -- -- --
227.93 0.703 2.98 -- -- -2.76 -- -- -0.116 -- 1015 1444 4.83 7.23
243.82 0.729 2.99 -- -- -- -- -- -0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.97 atmosphere 1015.0 1440 < th dose independent rect. 5 7
2 206.98 atmosphere 1015.0 1440 < th dose independent rect. 9 3
12 207.13 atmosphere 1015.0 1440 > th dose independent rect. 10 1
27 207.13 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
48 214.13 atmosphere 1000.0 10 < th dose independent rect. 21 1
55 214.13 atmosphere 1000.0 10 < th dose dependent rect. 21 1
75 215.73 temperature 25.0 30 > th dose dependent rect. 21 1
89 220.51 precipitation 0.1 10 > th dose independent rect. 19 1
99 220.51 precipitation 0.1 10 > th dose dependent rect. 19 1
124 222.55 temperature 25.0 10 > th dose dependent rect. 21 10
130 223.31 wind 3.0 10 > th dose independent rect. 18 5
188 223.90 wind 7.0 30 > th dose dependent rect. 19 1
207 224.36 atmosphere 1010.0 90 > th dose independent rect. 8 1
208 224.36 atmosphere 1010.0 10 > th dose independent rect. 9 1
300 226.12 atmosphere 1000.0 90 < th dose dependent rect. 20 12
302 226.14 atmosphere 1010.0 270 > th dose independent rect. 5 1
332 226.49 temperature 30.0 270 > th dose independent rect. 18 1
355 226.86 wind 1.0 10 > th dose dependent rect. 18 5
378 227.03 atmosphere 1000.0 270 < th dose dependent rect. 18 13
422 227.69 humidity 70.0 270 < th dose independent rect. 18 1
429 227.88 wind 3.0 4320 < th dose dependent rect. 2 1
435 228.05 temperature 25.0 270 > th dose dependent rect. 18 4
439 228.15 temperature 30.0 4320 > th dose independent rect. 17 16
440 228.17 atmosphere 1010.0 10 < th dose dependent rect. 18 5
441 228.18 temperature 30.0 4320 > th dose independent rect. 17 2
474 228.34 temperature 30.0 4320 < th dose independent rect. 17 13
483 228.37 temperature 30.0 4320 < th dose independent rect. 17 11
487 228.39 temperature 30.0 4320 < th dose independent rect. 17 3
488 228.39 temperature 30.0 4320 < th dose independent rect. 17 8
493 228.40 temperature 20.0 30 > th dose dependent rect. 18 14
495 228.41 temperature 30.0 4320 < th dose independent rect. 17 16
509 228.48 temperature 30.0 4320 > th dose dependent rect. 17 18
515 228.52 temperature 30.0 4320 > th dose dependent rect. 16 20
524 228.59 temperature 25.0 10 > th dose dependent sin 10 NA
530 228.68 temperature 30.0 4320 > th dose dependent sin 10 NA
533 228.73 temperature 25.0 30 < th dose independent rect. 21 13
536 228.76 wind 1.0 4320 > th dose independent rect. 2 3
545 228.79 atmosphere 1000.0 270 < th dose dependent rect. 17 20
546 228.80 wind 1.0 4320 < th dose independent rect. 2 1
548 228.82 wind 1.0 4320 > th dose independent rect. 2 1
578 228.97 wind 7.0 30 > th dose independent rect. 19 1
585 229.00 wind 1.0 4320 < th dose independent rect. 2 3
586 229.00 atmosphere 1010.0 270 > th dose dependent rect. 5 1
592 229.02 temperature 30.0 4320 > th dose independent sin 10 NA
594 229.03 temperature 30.0 4320 < th dose independent sin 10 NA
596 229.03 temperature 30.0 4320 > th dose dependent rect. 10 1
615 229.16 temperature 30.0 4320 > th dose dependent rect. 16 1
617 229.16 atmosphere 1000.0 90 < th dose dependent rect. 20 18
696 229.26 temperature 30.0 1440 < th dose independent sin 8 NA
727 229.28 temperature 30.0 1440 < th dose independent rect. 24 10
791 229.33 temperature 30.0 4320 > th dose dependent no NA NA
801 229.33 temperature 30.0 4320 > th dose dependent rect. 8 11
904 229.34 wind 1.0 4320 > th dose dependent rect. 1 3
944 229.36 temperature 30.0 4320 < th dose independent rect. 3 8
956 229.37 temperature 30.0 4320 > th dose independent rect. 8 3
957 229.37 temperature 30.0 4320 < th dose independent rect. 8 3
979 229.37 temperature 30.0 1440 > th dose independent rect. 17 22