BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0566900 Os12g0566900|AK064852
         (450 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0566900  Protein of unknown function DUF895, eukaryotic...   790   0.0  
Os12g0566800  Protein of unknown function DUF895, eukaryotic...    99   4e-21

>Os12g0566900 Protein of unknown function DUF895, eukaryotic domain containing
           protein
          Length = 450

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/450 (90%), Positives = 405/450 (90%)

Query: 1   MEDGHAPXXXXXXXXXXXXXXXXXXXVSXXXXXXXXXXXXTSQTRDXXXXXXXXXXXXXX 60
           MEDGHAP                   VS            TSQTRD              
Sbjct: 1   MEDGHAPAGAELAVALDEEEEEAAPLVSGRRGAAAAARAATSQTRDLHLLSSAFLFVFLA 60

Query: 61  YHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFI 120
           YHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFI
Sbjct: 61  YHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFI 120

Query: 121 AANLVPSWYTMVPASLYLGFTASIIWVGQGTYLTSAALSHARDNNLPEGQTLGNFNGEFW 180
           AANLVPSWYTMVPASLYLGFTASIIWVGQGTYLTSAALSHARDNNLPEGQTLGNFNGEFW
Sbjct: 121 AANLVPSWYTMVPASLYLGFTASIIWVGQGTYLTSAALSHARDNNLPEGQTLGNFNGEFW 180

Query: 181 GMFASTQVIGNLISLALLRDGKDGGSVTGKSLLFVVFLGCMIVGIILMCLLSKRDEKGNN 240
           GMFASTQVIGNLISLALLRDGKDGGSVTGKSLLFVVFLGCMIVGIILMCLLSKRDEKGNN
Sbjct: 181 GMFASTQVIGNLISLALLRDGKDGGSVTGKSLLFVVFLGCMIVGIILMCLLSKRDEKGNN 240

Query: 241 APTHSSFGAMMKYIVAPLKDRRMILIIPLIAYSGLQQAFVWAVFTKNIVTPVLGISGVGG 300
           APTHSSFGAMMKYIVAPLKDRRMILIIPLIAYSGLQQAFVWAVFTKNIVTPVLGISGVGG
Sbjct: 241 APTHSSFGAMMKYIVAPLKDRRMILIIPLIAYSGLQQAFVWAVFTKNIVTPVLGISGVGG 300

Query: 301 AMAIYGAADVVCSLVAGRLTSGLHSATSIVSVGAILQAVVLFWLLLFYSPMGGLLGAAVP 360
           AMAIYGAADVVCSLVAGRLTSGLHSATSIVSVGAILQAVVLFWLLLFYSPMGGLLGAAVP
Sbjct: 301 AMAIYGAADVVCSLVAGRLTSGLHSATSIVSVGAILQAVVLFWLLLFYSPMGGLLGAAVP 360

Query: 361 LFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPNITLQAM 420
           LFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPNITLQAM
Sbjct: 361 LFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPNITLQAM 420

Query: 421 LILMATALIISFGAFLLLTLVVEKPSTVRS 450
           LILMATALIISFGAFLLLTLVVEKPSTVRS
Sbjct: 421 LILMATALIISFGAFLLLTLVVEKPSTVRS 450



>Os12g0566800 Protein of unknown function DUF895, eukaryotic domain containing
           protein
          Length = 144

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 61/73 (83%)

Query: 61  YHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFI 120
           Y AAQNLQS+VNT+ +LG+VS+G+LYTSFT F+V  SPVV  +GS+RALV+GTSGY++FI
Sbjct: 52  YCAAQNLQSSVNTEGDLGTVSMGILYTSFTLFAVTASPVVTWLGSKRALVVGTSGYVIFI 111

Query: 121 AANLVPSWYTMVP 133
            ANLVP+W    P
Sbjct: 112 LANLVPTWCVRSP 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,683,349
Number of extensions: 514627
Number of successful extensions: 1464
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)