Os12g0566900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF895, eukaryotic domain containing protein.
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Os12g0566900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF895, eukaryotic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.36 | 0.25 | 13 | -0.148 | 0.98 | -0.81 | 0.098 | 0.614 | 0.0517 | 14.4 | 21.34 | 898 | -- | -- |
| 28.66 | 0.249 | 13 | -0.0924 | 0.983 | -0.979 | 0.185 | -- | 0.0569 | 14.4 | 20.96 | 902 | -- | -- |
| 28.39 | 0.248 | 13 | -0.146 | 0.98 | -0.796 | -- | 0.667 | 0.0521 | 14.4 | 21.39 | 899 | -- | -- |
| 28.78 | 0.25 | 13 | -0.1 | 0.987 | -0.995 | -- | -- | 0.0626 | 14.4 | 21 | 904 | -- | -- |
| 56.54 | 0.35 | 13 | -0.293 | -- | -1.48 | -- | 0.909 | -0.0836 | -- | 61.17 | 9 | -- | -- |
| 37.27 | 0.286 | 13 | 0.132 | 0.924 | -- | 0.277 | -- | 0.169 | 14.6 | -- | -- | -- | -- |
| 37.54 | 0.287 | 13 | 0.139 | 0.925 | -- | -- | -- | 0.17 | 14.6 | -- | -- | -- | -- |
| 55.27 | 0.348 | 13 | -0.18 | -- | -1.25 | -- | -- | -0.0886 | -- | 29.8 | 18 | -- | -- |
| 29.01 | 0.251 | 13 | -- | 0.984 | -0.934 | -- | -- | 0.0794 | 14.4 | 20.98 | 897 | -- | -- |
| 87.7 | 0.438 | 13 | 0.0995 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 38.05 | 0.289 | 13 | -- | 0.923 | -- | -- | -- | 0.155 | 14.6 | -- | -- | -- | -- |
| 56.04 | 0.35 | 13 | -- | -- | -1.21 | -- | -- | -0.0583 | -- | 30.02 | 19 | -- | -- |
| 87.97 | 0.438 | 13 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.31 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 3 | 27.49 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 14 |
| 8 | 27.57 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 12 | 27.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 18 | 27.66 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 24 | 27.71 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 27 | 27.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 41 | 27.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 42 | 27.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 67 | 27.90 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 11 |
| 81 | 27.94 | temperature | 20 | 720 | < th | dose dependent | sin | 7 | NA |
| 98 | 27.98 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 15 |
| 109 | 28.00 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 121 | 28.02 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |
| 144 | 28.05 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 203 | 28.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 213 | 28.14 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 218 | 28.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 299 | 28.26 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 311 | 28.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 325 | 28.29 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 338 | 28.31 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 366 | 28.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 373 | 28.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 392 | 28.38 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 430 | 28.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 456 | 28.47 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 19 |
| 478 | 28.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 518 | 28.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 560 | 28.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 700 | 28.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 712 | 28.88 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 730 | 28.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 784 | 28.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 818 | 29.01 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 829 | 29.02 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 830 | 29.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 928 | 29.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 944 | 29.16 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 986 | 29.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |