BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0566900 Os12g0566900|AK064852
         (450 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09470.1  | chr3:2910668-2914410 REVERSE LENGTH=465            447   e-126
AT1G18010.1  | chr1:6199980-6201359 FORWARD LENGTH=460             54   1e-07
AT1G18000.1  | chr1:6194668-6196047 REVERSE LENGTH=460             54   1e-07

>AT3G09470.1 | chr3:2910668-2914410 REVERSE LENGTH=465
          Length = 464

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 282/387 (72%), Gaps = 9/387 (2%)

Query: 44  TRDXXXXXXXXXXXXXXYHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVRRM 103
           TRD              Y AAQNL++TVN D  LG++SLG+LY SF   S+V S VVR M
Sbjct: 28  TRDVHILSISFLLIFLAYGAAQNLETTVNKD--LGTISLGILYVSFMFCSMVASLVVRLM 85

Query: 104 GSRRALVLGTSGYLLFIAANLVPSWYTMVPASLYLGFTASIIWVGQGTYLTSAALSHARD 163
           GS+ ALVLGT+GY LF+AANL PSW+TMVPASLYLGF ASIIWVGQGTYLTS A SHA D
Sbjct: 86  GSKNALVLGTTGYWLFVAANLKPSWFTMVPASLYLGFAASIIWVGQGTYLTSIARSHATD 145

Query: 164 NNLPEGQTLGNFNGEFWGMFASTQVIGNLISLALLRDGKDGGSVTGKSLLFVVFLGCMIV 223
           + L EG  +G FNGEFW MFA  Q+ GNLI+LALL+DGK+G S +G +LL +VFL  M +
Sbjct: 146 HGLHEGSVIGVFNGEFWAMFACHQLFGNLITLALLKDGKEG-STSGTTLLMLVFLFSMTL 204

Query: 224 GIILMCLLSKRDEKGNNAPTHS------SFGAMMKYIVAPLKDRRMILIIPLIAYSGLQQ 277
           G ILM  + K D +    P  S      S  ++ + I+ PL D RM+LI+PL+AYSGLQQ
Sbjct: 205 GTILMFFIRKIDGEDGKGPVGSPVGLVDSLASLPRMIITPLLDIRMLLIVPLLAYSGLQQ 264

Query: 278 AFVWAVFTKNIVTPVLGISGVGGAMAIYGAADVVCSLVAGRLTSGLHSATSIVSVGAILQ 337
           AFVWA FTK IVTP +G+SGVGGAMA+YGA D VCS+ AGR TSGL S T IVS GA+ Q
Sbjct: 265 AFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAVCSMTAGRFTSGLSSITFIVSGGAVAQ 324

Query: 338 AVVLFWLLLFYSPMGGLLGAAVPLFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQL 397
           A V  WLLL Y    G+LG A PL + A+ G+GDG+LNTQ+SALL LLF+   E AFAQL
Sbjct: 325 ASVFLWLLLGYRQTSGVLGTAYPLIMAAILGIGDGILNTQISALLALLFKHDTEGAFAQL 384

Query: 398 KVWQSGAIAVIFFLSPNITLQAMLILM 424
           KVWQS AIA++FFLSP I+LQAMLI+M
Sbjct: 385 KVWQSAAIAIVFFLSPYISLQAMLIVM 411



>AT1G18010.1 | chr1:6199980-6201359 FORWARD LENGTH=460
          Length = 459

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 22/194 (11%)

Query: 85  LYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFIAANLVPSWYTM----VPASLYLGF 140
           +YT+FT F ++G      +G R  L  G S Y+L+  + L  + +      + A   LG 
Sbjct: 74  VYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGC 133

Query: 141 TASIIWVGQGTYLTSAALSHARDNNLPEGQTLGNFNGEFWGMFASTQVIGNLISLALLRD 200
            A ++W G+G  +TS    H +          G +   FW +F    VIG LI   L   
Sbjct: 134 GAGLLWAGEGAVMTSYPPPHRK----------GTYIALFWSIFNLGGVIGGLIPFILNYQ 183

Query: 201 GKDGGSVTGKSLLFVVFLGCMIVGIIL------MCLLSKRDEKGNNAPTHSSFGAMMKYI 254
                SV   +  ++ F+  M  G++L         + + D    +A  +S        +
Sbjct: 184 RSSAASVNDST--YIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAV 241

Query: 255 VAPLKDRRMILIIP 268
           +    DR+M+LI+P
Sbjct: 242 LRLFLDRKMLLIVP 255



>AT1G18000.1 | chr1:6194668-6196047 REVERSE LENGTH=460
          Length = 459

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 22/194 (11%)

Query: 85  LYTSFTAFSVVGSPVVRRMGSRRALVLGTSGYLLFIAANLVPSWYTM----VPASLYLGF 140
           +YT+FT F ++G      +G R  L  G S Y+L+  + L  + +      + A   LG 
Sbjct: 74  VYTAFTVFGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGC 133

Query: 141 TASIIWVGQGTYLTSAALSHARDNNLPEGQTLGNFNGEFWGMFASTQVIGNLISLALLRD 200
            A ++W G+G  +TS    H +          G +   FW +F    VIG LI   L   
Sbjct: 134 GAGLLWAGEGAVMTSYPPPHRK----------GTYIALFWSIFNLGGVIGGLIPFILNYQ 183

Query: 201 GKDGGSVTGKSLLFVVFLGCMIVGIIL------MCLLSKRDEKGNNAPTHSSFGAMMKYI 254
                SV   +  ++ F+  M  G++L         + + D    +A  +S        +
Sbjct: 184 RSSAASVNDST--YIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAV 241

Query: 255 VAPLKDRRMILIIP 268
           +    DR+M+LI+P
Sbjct: 242 LRLFLDRKMLLIVP 255



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,034,655
Number of extensions: 323959
Number of successful extensions: 959
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)