Os12g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF895, eukaryotic domain containing protein.
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Os12g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF895, eukaryotic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.57 | 0.507 | 7.34 | -0.994 | 1.37 | 1.1 | 0.0516 | -1.02 | -0.445 | 11.9 | 20.6 | 967 | -- | -- |
| 118.98 | 0.508 | 7.31 | -0.811 | 1.38 | 1.24 | 0.303 | -- | -0.396 | 11.9 | 20.37 | 948 | -- | -- |
| 116.58 | 0.503 | 7.34 | -0.996 | 1.37 | 1.1 | -- | -1.04 | -0.445 | 11.9 | 20.6 | 967 | -- | -- |
| 119.38 | 0.509 | 7.31 | -0.806 | 1.38 | 1.25 | -- | -- | -0.398 | 11.9 | 20.35 | 948 | -- | -- |
| 202.23 | 0.666 | 7.33 | -0.686 | -- | 0.999 | -- | -0.422 | -0.355 | -- | 20.6 | 967 | -- | -- |
| 158.59 | 0.59 | 7.25 | -0.336 | 1.21 | -- | 0.433 | -- | -0.13 | 12 | -- | -- | -- | -- |
| 159.4 | 0.591 | 7.25 | -0.319 | 1.21 | -- | -- | -- | -0.129 | 11.9 | -- | -- | -- | -- |
| 203.19 | 0.667 | 7.32 | -0.609 | -- | 1.02 | -- | -- | -0.338 | -- | 20.6 | 967 | -- | -- |
| 133.68 | 0.539 | 7.28 | -- | 1.35 | 0.94 | -- | -- | -0.27 | 11.9 | 20.62 | 870 | -- | -- |
| 251.58 | 0.741 | 7.28 | -0.356 | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
| 162.08 | 0.596 | 7.24 | -- | 1.21 | -- | -- | -- | -0.0931 | 12 | -- | -- | -- | -- |
| 212.63 | 0.681 | 7.3 | -- | -- | 0.937 | -- | -- | -0.257 | -- | 20.6 | 967 | -- | -- |
| 254.92 | 0.745 | 7.27 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 4 | 111.90 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 5 | 111.94 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 7 | 112.30 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 20 |
| 25 | 113.38 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 50 | 114.23 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 52 | 114.29 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 18 |
| 60 | 114.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 62 | 114.50 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 95 | 115.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 102 | 115.15 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 103 | 115.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 148 | 115.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 150 | 115.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 162 | 115.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 208 | 116.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 216 | 116.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 227 | 116.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 231 | 116.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 237 | 116.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 373 | 117.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 407 | 117.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 417 | 117.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 436 | 117.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 438 | 117.38 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 481 | 117.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 485 | 117.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 567 | 117.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 601 | 117.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 646 | 118.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 767 | 118.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 873 | 118.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 922 | 118.92 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |