BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0566800 Os12g0566800|J100024N18
         (144 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0566800  Protein of unknown function DUF895, eukaryotic...   252   8e-68
Os12g0566900  Protein of unknown function DUF895, eukaryotic...   122   7e-29

>Os12g0566800 Protein of unknown function DUF895, eukaryotic domain containing
           protein
          Length = 144

 Score =  252 bits (643), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 127/144 (88%)

Query: 1   MRRRXXXXXXXXXXXXXXXXXVAPLGYSGHRWSHAGDLHVLSAAFLFIFSAYCAAQNLQS 60
           MRRR                 VAPLGYSGHRWSHAGDLHVLSAAFLFIFSAYCAAQNLQS
Sbjct: 1   MRRRPAGAGADGGATAPLLAGVAPLGYSGHRWSHAGDLHVLSAAFLFIFSAYCAAQNLQS 60

Query: 61  SVNTEGDLGTVSMGILYTSFTLFAVTASPVVTWLGSKRALVVGTSGYVIFILANLVPTWC 120
           SVNTEGDLGTVSMGILYTSFTLFAVTASPVVTWLGSKRALVVGTSGYVIFILANLVPTWC
Sbjct: 61  SVNTEGDLGTVSMGILYTSFTLFAVTASPVVTWLGSKRALVVGTSGYVIFILANLVPTWC 120

Query: 121 VRSPMNRMVLSFHMDRPAHGSAGA 144
           VRSPMNRMVLSFHMDRPAHGSAGA
Sbjct: 121 VRSPMNRMVLSFHMDRPAHGSAGA 144



>Os12g0566900 Protein of unknown function DUF895, eukaryotic domain containing
           protein
          Length = 450

 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 76/92 (82%)

Query: 33  SHAGDLHVLSAAFLFIFSAYCAAQNLQSSVNTEGDLGTVSMGILYTSFTLFAVTASPVVT 92
           S   DLH+LS+AFLF+F AY AAQNLQS+VNT+ +LG+VS+G+LYTSFT F+V  SPVV 
Sbjct: 42  SQTRDLHLLSSAFLFVFLAYHAAQNLQSTVNTDENLGSVSLGLLYTSFTAFSVVGSPVVR 101

Query: 93  WLGSKRALVVGTSGYVIFILANLVPTWCVRSP 124
            +GS+RALV+GTSGY++FI ANLVP+W    P
Sbjct: 102 RMGSRRALVLGTSGYLLFIAANLVPSWYTMVP 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,038,217
Number of extensions: 131170
Number of successful extensions: 330
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)