BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0566000 Os12g0566000|AK070617
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0566000 HCO3- transporter, eukaryote family protein 1401 0.0
Os01g0175600 HCO3- transporter, eukaryote family protein 730 0.0
Os05g0176800 HCO3- transporter, eukaryote family protein 680 0.0
>Os12g0566000 HCO3- transporter, eukaryote family protein
Length = 711
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/711 (96%), Positives = 686/711 (96%)
Query: 1 MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLER 60
MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLER
Sbjct: 1 MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLER 60
Query: 61 NTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRL 120
NTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRL
Sbjct: 61 NTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRL 120
Query: 121 FLAWTGWVCVWTXXXXXXXXXXGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFR 180
FLAWTGWVCVWT GACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFR
Sbjct: 121 FLAWTGWVCVWTAILLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFR 180
Query: 181 IPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGV 240
IPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGV
Sbjct: 181 IPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGV 240
Query: 241 PLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP 300
PLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP
Sbjct: 241 PLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP 300
Query: 301 ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDXXXXXXXXXXXXXXXIPPANGVIPQ 360
ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYD IPPANGVIPQ
Sbjct: 301 ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFLTLLCGLIGIPPANGVIPQ 360
Query: 361 SPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQMQTPLIYQQPSVK 420
SPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQMQTPLIYQQPSVK
Sbjct: 361 SPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQMQTPLIYQQPSVK 420
Query: 421 GLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGCV 480
GLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGCV
Sbjct: 421 GLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGCV 480
Query: 481 AAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETV 540
AAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETV
Sbjct: 481 AAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETV 540
Query: 541 PFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLD 600
PFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLD
Sbjct: 541 PFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLD 600
Query: 601 AAEYEESPAIPFIAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSGGTPVAE 660
AAEYEESPAIPFIAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSGGTPVAE
Sbjct: 601 AAEYEESPAIPFIAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSGGTPVAE 660
Query: 661 LKGIRSPCISERAYSPCITELRHDRSPLGGRGSPRTGETRSSKLGEGSTPK 711
LKGIRSPCISERAYSPCITELRHDRSPLGGRGSPRTGETRSSKLGEGSTPK
Sbjct: 661 LKGIRSPCISERAYSPCITELRHDRSPLGGRGSPRTGETRSSKLGEGSTPK 711
>Os01g0175600 HCO3- transporter, eukaryote family protein
Length = 672
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/683 (53%), Positives = 468/683 (68%), Gaps = 17/683 (2%)
Query: 1 MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLER 60
ME +P +G+ D+ GR YK DW GF +G RILAPT YIFFASA+PVI+FG QL R
Sbjct: 1 MELLKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSR 60
Query: 61 NTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRL 120
T+G+LT V+TLASTA+CGIIHS LGGQPLLI+GVAEPT++MYT+++NFAK++ LG RL
Sbjct: 61 ETNGILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERL 120
Query: 121 FLAWTGWVCVWTXXXXXXXXXXGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFR 180
+LAW GWVC+WT A ++I+RFTR+AGELFG+LI +LF+QQAIKG+++EF+
Sbjct: 121 YLAWAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFK 180
Query: 181 IPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGV 240
+P + + + W + NG+ ++ S GLL TALRSR+ARSW YG GWLRGFI+DYGV
Sbjct: 181 VPGGVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGV 240
Query: 241 PLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP 300
PLMV+VWT +SY VP G+PRRLFSP PW + +WT+ +D+ +VP YI A +P
Sbjct: 241 PLMVIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVPPAYIFAAILP 300
Query: 301 ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDXXXXXXXXXXXXXXXIPPANGVIPQ 360
A MIA LY+FDHSVASQLAQQKEFNL+KP ++HYD IPP+NGV+PQ
Sbjct: 301 ALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFMVLLCGLIGIPPSNGVLPQ 360
Query: 361 SPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQMQTPLIYQQPSV- 419
SPMHT+SLA LK QLLR ++V TA + + AS ++YG MQ + +M SV
Sbjct: 361 SPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVFIEMDCE--KNTDSVD 418
Query: 420 KGLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGC 479
K L LKD+ +Q G + FD K I+ LP+ V EQRLSNLLQ+ +VG C
Sbjct: 419 KELKSLKDAMLQEGDKEGTLAEE-----FDPIKHIEAHLPVRVNEQRLSNLLQSLLVGAC 473
Query: 480 VAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVET 539
V AMP++K IPTSVLWGYFA+MAI+SLPGNQFWERI L+F SRRYKVLE H +F+E+
Sbjct: 474 VGAMPVIKMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEGPHASFMES 533
Query: 540 VPFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDL 599
VP KTI +FT+FQ +YLL+CFGITWIPIAG+LFPL L++ +RQ++LPK F+ L +L
Sbjct: 534 VPSKTITVFTIFQLVYLLICFGITWIPIAGILFPLPFFLMILIRQHVLPKFFEPNDLREL 593
Query: 600 DAAEYEESPAIPF-----IAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSG 654
DAAEYEE + A D + +R AEILD++ T +RGE+K
Sbjct: 594 DAAEYEELEGVHHDHTLEDGASDSESCGSR-DDAEILDELTT-NRGELKHRTFNHREER- 650
Query: 655 GTPVAELKGIRSPCISERAYSPC 677
P A K ++ C +S C
Sbjct: 651 -HPQAHTKAVQPRCGDTENWSEC 672
>Os05g0176800 HCO3- transporter, eukaryote family protein
Length = 745
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/682 (51%), Positives = 450/682 (65%), Gaps = 62/682 (9%)
Query: 7 PLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTDGVL 66
P G+ ND GRL CYKQDW GFR G RILAPT YIFFASA+PV++FGEQL +TDG L
Sbjct: 75 PFEGVVNDFKGRLSCYKQDWIDGFRTGFRILAPTLYIFFASALPVVAFGEQLSNDTDGAL 134
Query: 67 TAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRLFLAWTG 126
T V+TLASTA+CGIIHS LGGQPLLI+GVAEPT++MYT+++NFAK+ P+LG RLFL W G
Sbjct: 135 TTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYIYNFAKNHPNLGERLFLPWAG 194
Query: 127 WVCVWTXXXXXXXXXXGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFRIPEREN 186
WVC+WT A +INRFTR AGELFG+LI +LFMQ+A+KG++ EF +PE ++
Sbjct: 195 WVCIWTAFMLFLMAMFNAAVVINRFTRFAGELFGMLITILFMQEAVKGMLGEFSVPEGKD 254
Query: 187 RKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGVPLMVLV 246
+ W + NG+ I+ S GLL TA+RSR ARS YGT V
Sbjct: 255 HSLPIYQFQWAYVNGLLGIIFSMGLLYTAIRSRSARSSLYGT-----------------V 297
Query: 247 WTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIR------------DMPNVPLLYI 294
WT +SY +P G+PRRLF+P PW P + +WTV + D+ +VP YI
Sbjct: 298 WTALSYSLPSKIPSGVPRRLFTPLPWEPKSLQHWTVAKVVMQFILIPGSNDLFSVPPPYI 357
Query: 295 IGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDXXXXXXXXXXXXXXX---- 350
A +PA M+A LY+FDHSVASQLAQQKEFNL+ P ++HYD
Sbjct: 358 FLAIVPAVMVAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDILVLSFMDTNAMQVLICGL 417
Query: 351 --IPPANGVIPQSPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQM 408
IPP+NGV+PQSPMHT+SLA LK QLLR ++V TA++ M NAS S++YG MQE + +M
Sbjct: 418 IGIPPSNGVLPQSPMHTRSLAVLKGQLLRKKMVQTAKEGMMNNASSSEVYGKMQEVFIKM 477
Query: 409 QTPLIYQQPSV-KGLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRL 467
SV K L ELKD+ + + G + VFD EK I+ LP+ V EQR+
Sbjct: 478 DDK--SNAKSVRKELKELKDAVIPEGNGAGRVS-----EVFDPEKHIEAYLPVRVNEQRV 530
Query: 468 SNLLQATMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYK 527
SNLLQ+ ++ GCV MP+++KIPTSVLWGYFA+M+I+S+PGNQFWER LLF +P RRYK
Sbjct: 531 SNLLQSLLIAGCVGVMPIIQKIPTSVLWGYFAYMSIDSVPGNQFWERTQLLFISPQRRYK 590
Query: 528 VLEEYHTTFVETVPFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYIL 587
+LE H +F+E+VP K I+ FT+FQ +YLL+ +G+TWIP+AG+LFPL+ L+ +RQYIL
Sbjct: 591 LLEGAHASFMESVPIKKISAFTIFQLVYLLIVWGMTWIPVAGILFPLLFFFLIVIRQYIL 650
Query: 588 PKLFKGAHLTDLDAAEYEESPAIPFIAAQDIDVALARTQSA------EILDDIVTRSRGE 641
PK F HL +LDAAEYEE + + D D +++R A EILD+ T +RGE
Sbjct: 651 PKFFDPRHLWELDAAEYEELEGVRRDPSTDEDASVSRCSDASPEYASEILDEFTT-NRGE 709
Query: 642 IK------------RLNSPKIT 651
+K +LNS K+T
Sbjct: 710 LKHRTKSFRDERLIQLNSVKMT 731
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,300,600
Number of extensions: 966620
Number of successful extensions: 1881
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1874
Number of HSP's successfully gapped: 3
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 160 (66.2 bits)