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Os01g0175600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HCO3- transporter, eukaryote family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.86 (0.0605) R2 : 0.792
β1 : 0.564 (0.221) R2dD : 0.00227 R2D : -0.00563
β2 : 8.88 (0.245) R2dC : 1.64 R2C : 0.342
β3 : -5.33 (0.301) R2dE : 0.409 R2E : -0.882
β4 : 5.08 (0.609) R2dD*C : 0.0346 R2D*C : 0.0182
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.333 (0.129) R2dN8 : 0.00604 R2N8 : 0.000288
σ : 1.11
deviance : 571.42
__
_____
C
peak time of C : 8.89
E
wheather : temperature
threshold : 6.914
memory length : 246
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21
open length of G : 16.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
561.98 1.11 8.84 0.865 8.84 -5.47 3.13 4.37 -0.309 8.9 8.812 257 21 16.1
571.42 1.11 8.86 0.564 8.88 -5.33 5.08 -- -0.333 8.89 6.914 246 21 16.2
574.02 1.12 8.85 1.09 9 -5.56 -- 7.37 -0.347 8.85 7.079 262 21 16.1
661.4 1.2 8.87 0.726 9.1 -5.45 -- -- -0.381 8.82 3.895 247 21 16.2
1593.45 1.86 8.94 1.6 -- -5.68 -- 9.32 -0.136 -- 7.354 483 12.7 11.2
912.39 1.42 9.08 -0.0808 5.38 -- 4.65 -- -0.782 9.59 -- -- -- --
992.93 1.48 9.08 0.092 5.37 -- -- -- -0.776 9.57 -- -- -- --
1160.52 1.59 9.12 0.559 -- -5.06 -- -- -0.0857 -- 1.396 285 15.6 9.67
663.98 1.2 8.93 -- 9.09 -5.3 -- -- -0.607 8.75 1.824 248 21 16.1
2693.43 2.43 9.22 0.0513 -- -- -- -- -0.763 -- -- -- -- --
993.15 1.47 9.08 -- 5.37 -- -- -- -0.786 9.57 -- -- -- --
1108.92 1.55 9.39 -- -- -5.1 -- -- -0.88 -- -4.285 292 15.5 9.58
2693.5 2.42 9.22 -- -- -- -- -- -0.769 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 565.36 temperature 10.0 270 > th dose dependent rect. 21 16
3 587.26 humidity 50.0 270 > th dose dependent rect. 19 7
5 591.62 humidity 60.0 90 > th dose dependent rect. 21 6
6 591.97 temperature 20.0 270 > th dose independent rect. 20 17
14 600.93 precipitation 0.1 270 < th dose independent rect. 1 20
15 600.93 precipitation 0.1 270 < th dose dependent rect. 1 20
16 601.96 temperature 20.0 270 > th dose independent rect. 6 9
18 602.30 precipitation 0.1 270 < th dose independent rect. 2 18
19 602.30 precipitation 0.1 270 < th dose dependent rect. 2 18
21 605.30 humidity 60.0 270 > th dose dependent rect. 21 4
34 611.10 precipitation 0.1 270 < th dose independent rect. 15 15
35 611.10 precipitation 0.1 270 < th dose dependent rect. 15 15
37 611.48 temperature 20.0 270 > th dose independent rect. 21 4
40 612.69 temperature 10.0 270 > th dose dependent rect. 6 8
49 616.62 humidity 70.0 270 > th dose independent rect. 19 7
53 617.31 radiation 1.0 270 < th dose dependent rect. 11 15
57 618.96 humidity 80.0 90 > th dose independent rect. 21 6
64 621.63 temperature 10.0 270 > th dose independent rect. 19 7
65 621.63 temperature 30.0 270 < th dose independent rect. 19 7
66 621.63 humidity 50.0 270 > th dose independent rect. 19 7
67 621.63 atmosphere 995.0 270 > th dose independent rect. 19 7
68 621.63 radiation 1.0 270 < th dose independent rect. 19 7
73 621.63 temperature 10.0 270 > th dose independent rect. 2 17
74 621.63 atmosphere 1015.0 270 < th dose independent rect. 2 17
75 621.63 radiation 10.0 270 < th dose dependent rect. 19 7
81 621.78 wind 9.0 270 < th dose independent rect. 19 7
82 621.82 temperature 20.0 270 > th dose independent rect. 20 6
83 621.95 precipitation 0.1 270 < th dose independent rect. 13 8
84 621.95 precipitation 0.1 270 < th dose dependent rect. 13 8
91 622.80 humidity 90.0 270 < th dose independent rect. 13 8
94 623.83 temperature 10.0 10 > th dose dependent rect. 23 16
96 624.13 humidity 90.0 270 < th dose independent rect. 14 6
98 624.34 wind 9.0 270 < th dose independent rect. 2 17
105 625.44 radiation 1.0 270 < th dose independent rect. 11 15
127 626.24 temperature 10.0 270 > th dose dependent rect. 14 7
133 626.92 temperature 10.0 270 > th dose dependent rect. 21 4
139 627.39 temperature 30.0 270 < th dose independent rect. 21 4
140 627.39 humidity 50.0 270 > th dose independent rect. 21 4
143 627.39 atmosphere 995.0 270 > th dose independent rect. 21 4
144 627.39 radiation 1.0 270 < th dose independent rect. 21 4
149 627.39 temperature 10.0 270 > th dose independent rect. 1 20
150 627.39 radiation 10.0 270 < th dose dependent rect. 21 4
156 627.46 wind 9.0 270 < th dose independent rect. 21 4
165 629.29 precipitation 0.1 270 < th dose independent rect. 21 4
166 629.29 precipitation 0.1 270 < th dose dependent rect. 21 4
172 629.77 wind 9.0 90 < th dose dependent rect. 21 6
195 630.46 precipitation 0.1 270 < th dose independent rect. 20 6
196 630.46 precipitation 0.1 270 < th dose dependent rect. 20 6
200 630.68 wind 9.0 270 < th dose independent rect. 1 20
210 631.90 wind 9.0 270 < th dose independent rect. 6 9
213 632.33 wind 9.0 270 < th dose dependent rect. 21 4
219 632.93 radiation 40.0 270 < th dose independent rect. 15 15
222 633.30 atmosphere 1015.0 270 < th dose independent rect. 6 9
223 633.30 temperature 10.0 270 > th dose independent rect. 15 15
226 633.61 wind 1.0 270 > th dose independent rect. 13 8
227 633.67 wind 9.0 270 < th dose independent rect. 15 15
228 634.01 atmosphere 995.0 270 > th dose independent rect. 6 9
230 634.27 atmosphere 1015.0 270 < th dose independent rect. 1 20
232 634.56 radiation 1.0 270 > th dose independent rect. 6 9
234 634.71 precipitation 0.1 270 < th dose independent rect. 6 9
235 634.71 precipitation 0.1 270 < th dose dependent rect. 6 9
238 635.21 temperature 15.0 270 > th dose independent rect. 9 16
262 635.48 humidity 50.0 270 > th dose independent rect. 21 16
268 637.02 wind 9.0 270 < th dose dependent rect. 19 7
272 637.23 temperature 10.0 270 > th dose dependent rect. 20 6
274 637.69 wind 9.0 270 < th dose independent rect. 21 16
275 637.98 humidity 60.0 90 > th dose dependent rect. 12 15
280 638.79 wind 7.0 270 < th dose independent rect. 1 8
293 639.69 wind 9.0 270 < th dose independent rect. 13 8
299 640.12 temperature 10.0 270 > th dose independent rect. 13 8
301 640.12 atmosphere 995.0 270 > th dose independent rect. 21 16
304 640.39 precipitation 0.1 270 < th dose independent rect. 1 8
305 640.39 precipitation 0.1 270 < th dose dependent rect. 1 8
309 641.30 temperature 30.0 90 < th dose dependent rect. 3 8
321 641.73 temperature 10.0 270 > th dose dependent rect. 23 1
327 642.29 temperature 30.0 270 < th dose independent rect. 1 8
332 642.90 humidity 70.0 90 > th dose dependent rect. 15 12
351 644.19 humidity 60.0 270 > th dose dependent rect. 23 1
364 645.38 temperature 10.0 270 > th dose independent rect. 1 8
366 645.38 humidity 50.0 270 > th dose independent rect. 1 8
367 645.38 atmosphere 995.0 270 > th dose independent rect. 1 8
368 645.38 atmosphere 1015.0 270 < th dose independent rect. 1 8
370 645.72 wind 9.0 270 < th dose independent rect. 9 16
378 646.27 humidity 80.0 270 > th dose independent rect. 23 1
379 646.32 radiation 40.0 270 < th dose dependent rect. 1 8
389 646.73 humidity 80.0 270 > th dose independent rect. 17 9
393 647.07 atmosphere 1015.0 270 < th dose independent rect. 13 8
396 647.25 temperature 25.0 270 > th dose independent rect. 14 6
426 647.91 humidity 80.0 270 > th dose independent rect. 15 11
437 648.33 humidity 80.0 270 < th dose independent rect. 15 4
438 648.36 temperature 30.0 270 < th dose dependent rect. 1 8
473 650.65 radiation 1.0 270 > th dose independent rect. 15 15
485 651.36 precipitation 0.1 270 < th dose independent rect. 21 16
486 651.36 precipitation 0.1 270 < th dose dependent rect. 21 16
502 652.31 atmosphere 1015.0 270 < th dose independent rect. 21 4
544 653.55 humidity 80.0 270 > th dose independent rect. 12 13
553 654.07 atmosphere 1015.0 90 < th dose independent rect. 21 6
566 654.96 humidity 60.0 10 > th dose dependent rect. 23 4
595 655.38 radiation 40.0 270 < th dose independent rect. 1 8
608 655.93 humidity 90.0 10 < th dose independent rect. 16 7
610 655.98 wind 9.0 270 < th dose dependent rect. 23 1
661 657.81 atmosphere 995.0 90 > th dose independent rect. 3 18
665 658.04 humidity 80.0 10 > th dose independent rect. 23 4
671 658.26 wind 5.0 270 < th dose independent rect. 23 1
682 658.65 precipitation 0.1 270 < th dose independent rect. 23 1
683 658.65 precipitation 0.1 270 < th dose dependent rect. 23 1
691 659.02 wind 9.0 270 < th dose independent rect. 23 1
693 659.02 temperature 30.0 270 < th dose independent rect. 23 1
694 659.02 humidity 50.0 270 > th dose independent rect. 23 1
697 659.02 atmosphere 995.0 270 > th dose independent rect. 23 1
698 659.02 radiation 1.0 270 < th dose independent rect. 23 1
703 659.02 temperature 10.0 270 > th dose independent rect. 24 23
704 659.02 radiation 1.0 270 < th dose dependent rect. 23 1
712 659.19 atmosphere 1015.0 270 < th dose independent rect. 19 7
717 659.28 humidity 50.0 270 > th dose independent rect. 6 9
725 659.68 wind 9.0 270 < th dose dependent rect. 1 8
731 659.82 temperature 20.0 270 > th dose independent rect. 6 20
740 660.24 radiation 20.0 270 < th dose independent rect. 1 7
858 663.71 humidity 80.0 10 > th dose dependent rect. 13 14
913 665.08 atmosphere 995.0 270 > th dose independent rect. 9 16
959 666.22 temperature 10.0 10 > th dose dependent rect. 16 7
967 666.42 humidity 50.0 270 > th dose independent rect. 8 17