BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0175600 Os01g0175600|AK072421
(672 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0175600 HCO3- transporter, eukaryote family protein 1355 0.0
Os05g0176800 HCO3- transporter, eukaryote family protein 949 0.0
Os12g0566000 HCO3- transporter, eukaryote family protein 720 0.0
>Os01g0175600 HCO3- transporter, eukaryote family protein
Length = 672
Score = 1355 bits (3507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/672 (98%), Positives = 659/672 (98%)
Query: 1 MELLKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSR 60
MELLKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSR
Sbjct: 1 MELLKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSR 60
Query: 61 ETNGILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERL 120
ETNGILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERL
Sbjct: 61 ETNGILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERL 120
Query: 121 YLAWAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFK 180
YLAWAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFK
Sbjct: 121 YLAWAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFK 180
Query: 181 VPGGVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGV 240
VPGGVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGV
Sbjct: 181 VPGGVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGV 240
Query: 241 PLMVIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVPPAYIFAAILP 300
PLMVIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVPPAYIFAAILP
Sbjct: 241 PLMVIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVPPAYIFAAILP 300
Query: 301 ALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFMVLLCGLIGIPPSNGVLPQ 360
ALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFMVLLCGLIGIPPSNGVLPQ
Sbjct: 301 ALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFMVLLCGLIGIPPSNGVLPQ 360
Query: 361 SPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVFIEMDCEKNTDSVDKE 420
SPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVFIEMDCEKNTDSVDKE
Sbjct: 361 SPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVFIEMDCEKNTDSVDKE 420
Query: 421 LKSLKDAMLQEGDKEGTLAEEFDPIKHIEAHLPVRVNEQRLSNLLQSLLVGACVGAMPVI 480
LKSLKDAMLQEGDKEGTLAEEFDPIKHIEAHLPVRVNEQRLSNLLQSLLVGACVGAMPVI
Sbjct: 421 LKSLKDAMLQEGDKEGTLAEEFDPIKHIEAHLPVRVNEQRLSNLLQSLLVGACVGAMPVI 480
Query: 481 KMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEGPHASFMESVPSKTIT 540
KMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEGPHASFMESVPSKTIT
Sbjct: 481 KMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEGPHASFMESVPSKTIT 540
Query: 541 VFTIFQLVYLLICFGITWIPIAGXXXXXXXXXXXXXRQHVLPKFFEPNDLRELDAAEYEE 600
VFTIFQLVYLLICFGITWIPIAG RQHVLPKFFEPNDLRELDAAEYEE
Sbjct: 541 VFTIFQLVYLLICFGITWIPIAGILFPLPFFLMILIRQHVLPKFFEPNDLRELDAAEYEE 600
Query: 601 LEGVHHDHTLEDGASDSESCGSRDDAEILDELTTNRGELKHRTFNHREERHPQAHTKAVQ 660
LEGVHHDHTLEDGASDSESCGSRDDAEILDELTTNRGELKHRTFNHREERHPQAHTKAVQ
Sbjct: 601 LEGVHHDHTLEDGASDSESCGSRDDAEILDELTTNRGELKHRTFNHREERHPQAHTKAVQ 660
Query: 661 PRCGDTENWSEC 672
PRCGDTENWSEC
Sbjct: 661 PRCGDTENWSEC 672
>Os05g0176800 HCO3- transporter, eukaryote family protein
Length = 745
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/673 (69%), Positives = 538/673 (79%), Gaps = 37/673 (5%)
Query: 4 LKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSRETN 63
+K PF+GVV D +GR + YK DW++GF +GFRILAPT+YIFFASALPV+AFG QLS +T+
Sbjct: 72 VKAPFEGVVNDFKGRLSCYKQDWIDGFRTGFRILAPTLYIFFASALPVVAFGEQLSNDTD 131
Query: 64 GILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERLYLA 123
G LTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTY+YNFAKN LGERL+L
Sbjct: 132 GALTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYIYNFAKNHPNLGERLFLP 191
Query: 124 WAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFKVPG 183
WAGWVCIWTA MLFL+AMFNA+ VI+RFTR AGELFGMLIT+LF+Q+A+KG++ EF VP
Sbjct: 192 WAGWVCIWTAFMLFLMAMFNAAVVINRFTRFAGELFGMLITILFMQEAVKGMLGEFSVPE 251
Query: 184 GVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGVPLM 243
G DHS PIY+FQW YVNGLLG+IFS+GLLYTA+RSR ARS +YG
Sbjct: 252 GKDHSLPIYQFQWAYVNGLLGIIFSMGLLYTAIRSRSARSSLYG---------------- 295
Query: 244 VIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAK------------DLFSVPP 291
VWTALSY+LP +PSGVPRRLF+PLPWE SL HWT+AK DLFSVPP
Sbjct: 296 -TVWTALSYSLPSKIPSGVPRRLFTPLPWEPKSLQHWTVAKVVMQFILIPGSNDLFSVPP 354
Query: 292 AYIFAAILPALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFM------VLL 345
YIF AI+PA+M+AGLYFFDHSVASQLAQQKEFNLK PSAYHYDILVL FM VL+
Sbjct: 355 PYIFLAIVPAVMVAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDILVLSFMDTNAMQVLI 414
Query: 346 CGLIGIPPSNGVLPQSPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVF 405
CGLIGIPPSNGVLPQSPMHTRSLAVLKGQLLRKKMVQTA EG+MN ASS E+YGKMQ VF
Sbjct: 415 CGLIGIPPSNGVLPQSPMHTRSLAVLKGQLLRKKMVQTAKEGMMNNASSSEVYGKMQEVF 474
Query: 406 IEMDCEKNTDSVDKELKSLKDAMLQEGDKEGTLAEEFDPIKHIEAHLPVRVNEQRLSNLL 465
I+MD + N SV KELK LKDA++ EG+ G ++E FDP KHIEA+LPVRVNEQR+SNLL
Sbjct: 475 IKMDDKSNAKSVRKELKELKDAVIPEGNGAGRVSEVFDPEKHIEAYLPVRVNEQRVSNLL 534
Query: 466 QSLLVGACVGAMPVIKMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEG 525
QSLL+ CVG MP+I+ IPTSVLWGYFAYM+IDS+PGNQFWER +L+FI RRYK+LEG
Sbjct: 535 QSLLIAGCVGVMPIIQKIPTSVLWGYFAYMSIDSVPGNQFWERTQLLFISPQRRYKLLEG 594
Query: 526 PHASFMESVPSKTITVFTIFQLVYLLICFGITWIPIAGXXXXXXXXXXXXXRQHVLPKFF 585
HASFMESVP K I+ FTIFQLVYLLI +G+TWIP+AG RQ++LPKFF
Sbjct: 595 AHASFMESVPIKKISAFTIFQLVYLLIVWGMTWIPVAGILFPLLFFFLIVIRQYILPKFF 654
Query: 586 EPNDLRELDAAEYEELEGVHHDHTLEDGASDSESCGSRDD--AEILDELTTNRGELKHRT 643
+P L ELDAAEYEELEGV D + ++ AS S + + +EILDE TTNRGELKHRT
Sbjct: 655 DPRHLWELDAAEYEELEGVRRDPSTDEDASVSRCSDASPEYASEILDEFTTNRGELKHRT 714
Query: 644 FNHREERHPQAHT 656
+ R+ER Q ++
Sbjct: 715 KSFRDERLIQLNS 727
>Os12g0566000 HCO3- transporter, eukaryote family protein
Length = 711
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/683 (55%), Positives = 482/683 (70%), Gaps = 17/683 (2%)
Query: 1 MELLKIPFKGVVADIEGRAAWYKHDWLEGFHSGFRILAPTMYIFFASALPVIAFGTQLSR 60
ME +P +G+ D+ GR YK DW GF +G RILAPT YIFFASA+PVI+FG QL R
Sbjct: 1 MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLER 60
Query: 61 ETNGILTTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKNQQALGERL 120
T+G+LT V+TLASTA+CGIIHS LGGQPLLI+GVAEPT++MYT+++NFAK++ LG RL
Sbjct: 61 NTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLMYTFMFNFAKDRPDLGRRL 120
Query: 121 YLAWAGWVCIWTAIMLFLLAMFNASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFK 180
+LAW GWVC+WTAI+LFLLA+ A ++I+RFTR+AGELFG+LI +LF+QQAIKG+++EF+
Sbjct: 121 FLAWTGWVCVWTAILLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFR 180
Query: 181 VPGGVDHSSPIYRFQWLYVNGLLGVIFSIGLLYTALRSRRARSWVYGQGWLRGFISDYGV 240
+P + + + W + NG+ ++ S GLL TALRSR+ARSW YG GWLRGFI+DYGV
Sbjct: 181 IPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRSRKARSWRYGTGWLRGFIADYGV 240
Query: 241 PLMVIVWTALSYALPKDVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVPPAYIFAAILP 300
PLMV+VWT +SY VP G+PRRLFSP PW + +WT+ +D+ +VP YI A +P
Sbjct: 241 PLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGAYDNWTVIRDMPNVPLLYIIGAFIP 300
Query: 301 ALMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILVLGFMVLLCGLIGIPPSNGVLPQ 360
A MIA LY+FDHSVASQLAQQKEFNL+KP ++HYD+L+LGF+ LLCGLIGIPP+NGV+PQ
Sbjct: 301 ATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFLTLLCGLIGIPPANGVIPQ 360
Query: 361 SPMHTRSLAVLKGQLLRKKMVQTANEGLMNRASSLEIYGKMQGVFIEMDCE--KNTDSVD 418
SPMHT+SLA LK QLLR ++V TA + + AS ++YG MQ + +M SV
Sbjct: 361 SPMHTKSLATLKHQLLRNRLVATARQSMSQNASLSQLYGSMQEAYQQMQTPLIYQQPSV- 419
Query: 419 KELKSLKDAMLQEGDKEGTLAEE-----FDPIKHIEAHLPVRVNEQRLSNLLQSLLVGAC 473
K L LKD+ +Q G + FD K I+ LP+ V EQRLSNLLQ+ +VG C
Sbjct: 420 KGLNELKDSTVQMASSMGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQATMVGGC 479
Query: 474 VGAMPVIKMIPTSVLWGYFAYMAIDSLPGNQFWERIRLIFIPSSRRYKVLEGPHASFMES 533
V AMP++K IPTSVLWGYFA+MAI+SLPGNQFWERI L+F SRRYKVLE H +F+E+
Sbjct: 480 VAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVET 539
Query: 534 VPSKTITVFTIFQLVYLLICFGITWIPIAGXXXXXXXXXXXXXRQHVLPKFFEPNDLREL 593
VP KTI +FT+FQ +YLL+CFGITWIPIAG RQ++LPK F+ L +L
Sbjct: 540 VPFKTIAMFTLFQTMYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDL 599
Query: 594 DAAEYEELEGVHHDHTLEDGASDSESCGSR-DDAEILDELTT-NRGELKHRTFNHREER- 650
DAAEYEE + A D + +R AEILD++ T +RGE+K
Sbjct: 600 DAAEYEESPAIPF-----IAAQDIDVALARTQSAEILDDIVTRSRGEIKRLNSPKITSSG 654
Query: 651 -HPQAHTKAVQPRCGDTENWSEC 672
P A K ++ C +S C
Sbjct: 655 GTPVAELKGIRSPCISERAYSPC 677
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,786,722
Number of extensions: 954525
Number of successful extensions: 2122
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2117
Number of HSP's successfully gapped: 3
Length of query: 672
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 565
Effective length of database: 11,448,903
Effective search space: 6468630195
Effective search space used: 6468630195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)