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Os12g0566000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HCO3- transporter, eukaryote family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.53 (0.0461) R2 : 0.598
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.49 (0.206) R2dC : 0.452 R2C : -0.962
β3 : -4.88 (0.22) R2dE : 1.56 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.093 (0.0962) R2dN8 : 0.000623 R2N8 : 0.0018
σ : 0.856
deviance : 337.5
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C
peak time of C : 10.5
E
wheather : temperature
threshold : 9.274
memory length : 46
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.83
open length of G : 8.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.6 0.833 7.54 -0.741 2.49 -4.79 1.71 -4.02 -0.144 10.5 8.826 11 5.98 8
335 0.852 7.54 -0.456 2.43 -4.59 -0.027 -- -0.156 10 8.413 20 5.93 8.02
317.51 0.83 7.54 -0.669 2.49 -4.8 -- -2.18 -0.152 10.5 8.516 10 5.98 7.98
328.02 0.844 7.55 -0.649 2.35 -4.71 -- -- -0.17 10.5 8.91 37 5.83 8.02
410.7 0.944 7.62 -0.704 -- -3.12 -- -2.51 -0.202 -- 16.73 4 6.02 8.24
672.12 1.22 7.67 -0.783 1.42 -- 2.07 -- -0.34 23.6 -- -- -- --
690.15 1.23 7.67 -0.863 1.42 -- -- -- -0.346 23.4 -- -- -- --
411.91 0.945 7.62 -0.684 -- -3.3 -- -- -0.286 -- 17.56 60 6.17 7.63
337.5 0.856 7.53 -- 2.49 -4.88 -- -- -0.093 10.5 9.274 46 5.83 8.01
816.26 1.34 7.64 -0.827 -- -- -- -- -0.332 -- -- -- -- --
709.78 1.25 7.65 -- 1.41 -- -- -- -0.25 23.3 -- -- -- --
418.4 0.953 7.59 -- -- -3.39 -- -- -0.0636 -- 18.82 50 6.02 7.75
834.29 1.35 7.62 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.27 temperature 10.0 10 > th dose dependent rect. 6 8
2 325.57 temperature 10.0 270 > th dose dependent rect. 5 7
13 361.27 wind 1.0 270 > th dose independent rect. 17 8
14 363.30 precipitation 0.1 270 < th dose independent rect. 17 8
15 363.30 precipitation 0.1 270 < th dose dependent rect. 17 8
17 365.23 atmosphere 995.0 270 > th dose independent rect. 1 16
18 365.72 temperature 10.0 270 > th dose independent rect. 17 8
19 365.72 radiation 20.0 270 < th dose independent rect. 17 8
22 365.72 temperature 10.0 270 > th dose independent rect. 1 16
23 365.72 atmosphere 1015.0 270 < th dose independent rect. 1 16
25 366.84 wind 9.0 270 < th dose independent rect. 17 8
27 367.92 wind 9.0 270 < th dose independent rect. 1 16
28 368.44 radiation 40.0 270 < th dose dependent rect. 16 9
29 370.51 precipitation 0.1 270 < th dose independent rect. 5 8
30 370.51 precipitation 0.1 270 < th dose dependent rect. 5 8
32 370.83 radiation 1.0 10 > th dose independent rect. 6 8
35 371.13 wind 9.0 270 < th dose independent rect. 5 8
36 371.31 wind 9.0 270 < th dose independent rect. 13 16
43 371.80 precipitation 0.1 270 < th dose independent rect. 1 16
44 371.80 precipitation 0.1 270 < th dose dependent rect. 1 16
45 371.99 radiation 40.0 10 < th dose independent rect. 14 16
46 372.06 temperature 10.0 270 > th dose independent rect. 5 8
47 372.06 atmosphere 995.0 270 > th dose independent rect. 5 8
48 372.06 atmosphere 1015.0 270 < th dose independent rect. 5 8
49 372.06 temperature 10.0 270 > th dose independent rect. 13 16
52 372.59 precipitation 0.1 10 < th dose independent rect. 6 8
53 372.59 precipitation 0.1 10 < th dose dependent rect. 6 8
62 373.97 wind 9.0 10 < th dose independent rect. 6 8
63 374.01 radiation 1.0 90 > th dose independent rect. 6 8
67 374.26 temperature 10.0 10 > th dose independent rect. 6 8
69 374.26 atmosphere 995.0 10 > th dose independent rect. 6 8
70 374.26 atmosphere 1015.0 10 < th dose independent rect. 6 8
71 374.26 temperature 10.0 10 > th dose independent rect. 14 16
72 374.27 wind 1.0 10 > th dose independent rect. 6 8
74 374.94 humidity 50.0 270 > th dose independent rect. 17 8
76 375.11 wind 9.0 10 < th dose independent rect. 14 16
83 376.00 radiation 1.0 270 < th dose dependent sin 6 NA
93 378.94 atmosphere 995.0 270 > th dose independent rect. 13 16
107 380.39 radiation 1.0 270 > th dose independent rect. 17 20
113 380.76 humidity 50.0 270 > th dose independent rect. 5 8
120 381.62 atmosphere 995.0 10 > th dose independent rect. 14 16
141 383.77 radiation 1.0 270 < th dose independent sin 7 NA
143 384.07 radiation 1.0 270 > th dose independent rect. 18 18
144 384.16 atmosphere 995.0 270 > th dose independent rect. 17 8
159 386.62 temperature 10.0 1440 > th dose independent rect. 7 8
162 386.62 temperature 10.0 1440 > th dose independent rect. 15 16
165 386.70 radiation 1.0 270 > th dose independent sin 6 NA
181 387.00 humidity 50.0 270 > th dose dependent rect. 23 7
190 390.03 wind 9.0 270 < th dose dependent rect. 23 7
194 390.86 radiation 1.0 270 < th dose independent rect. 24 16
196 391.00 wind 1.0 270 > th dose independent rect. 4 8
205 391.54 radiation 1.0 270 < th dose independent rect. 24 11
208 391.67 radiation 1.0 270 < th dose dependent rect. 24 15
214 391.95 radiation 1.0 270 < th dose dependent rect. 24 11
235 393.37 wind 9.0 270 < th dose dependent rect. 1 4
252 393.96 precipitation 0.1 270 < th dose independent rect. 13 16
253 393.96 precipitation 0.1 270 < th dose dependent rect. 13 16
255 394.01 humidity 90.0 90 < th dose independent rect. 19 19
270 395.40 humidity 50.0 270 > th dose dependent rect. 24 5
284 396.16 precipitation 0.1 270 < th dose independent rect. 6 17
285 396.16 precipitation 0.1 270 < th dose dependent rect. 6 17
287 396.32 temperature 10.0 270 > th dose dependent rect. 1 4
295 397.08 temperature 10.0 270 > th dose dependent rect. 17 7
297 397.29 precipitation 0.1 270 < th dose independent rect. 18 17
298 397.29 precipitation 0.1 270 < th dose dependent rect. 18 17
315 398.19 humidity 90.0 10 < th dose independent rect. 6 8
317 398.20 atmosphere 1015.0 10 < th dose independent rect. 14 16
325 398.79 wind 7.0 270 < th dose independent rect. 23 7
337 399.62 temperature 10.0 270 > th dose independent rect. 23 7
338 399.62 temperature 30.0 270 < th dose independent rect. 23 7
339 399.62 humidity 50.0 270 > th dose independent rect. 23 7
342 399.62 atmosphere 995.0 270 > th dose independent rect. 23 7
343 399.62 radiation 20.0 270 < th dose independent rect. 23 7
346 399.62 temperature 10.0 270 > th dose independent rect. 6 17
349 399.99 precipitation 0.1 30 < th dose independent rect. 14 16
351 399.99 precipitation 0.1 30 < th dose dependent rect. 14 16
352 400.07 atmosphere 995.0 270 > th dose dependent rect. 11 7
355 400.34 radiation 40.0 270 < th dose dependent rect. 23 7
364 400.87 atmosphere 1015.0 270 < th dose independent rect. 23 7
366 401.07 precipitation 0.1 270 < th dose independent rect. 5 20
367 401.07 precipitation 0.1 270 < th dose dependent rect. 5 20
368 401.15 wind 3.0 270 < th dose independent rect. 1 4
382 401.96 radiation 1.0 270 < th dose dependent rect. 1 4
383 402.00 wind 7.0 270 < th dose independent rect. 1 4
389 402.10 temperature 10.0 270 > th dose independent rect. 1 4
391 402.10 temperature 30.0 270 < th dose independent rect. 1 4
392 402.10 humidity 50.0 270 > th dose independent rect. 1 4
395 402.10 atmosphere 995.0 270 > th dose independent rect. 1 4
396 402.10 atmosphere 1010.0 270 < th dose independent rect. 1 4
398 402.10 radiation 20.0 270 < th dose independent rect. 1 4
401 402.10 temperature 10.0 270 > th dose independent rect. 5 20
403 402.17 radiation 40.0 270 < th dose dependent rect. 1 4
408 402.38 wind 9.0 270 < th dose independent rect. 6 17
409 402.41 radiation 1.0 270 < th dose independent rect. 1 4
412 402.42 precipitation 0.1 270 < th dose independent rect. 23 7
413 402.42 precipitation 0.1 270 < th dose dependent rect. 23 7
421 403.05 humidity 90.0 90 < th dose independent rect. 6 8
436 403.98 wind 9.0 270 < th dose independent rect. 5 20
457 404.72 precipitation 0.1 270 < th dose independent rect. 1 4
459 404.72 precipitation 0.1 270 < th dose dependent rect. 1 4
491 405.35 wind 9.0 270 < th dose independent rect. 11 7
492 405.43 temperature 10.0 270 > th dose dependent rect. 18 17
494 405.63 wind 9.0 270 < th dose independent rect. 18 17
496 405.66 humidity 50.0 270 > th dose independent rect. 18 17
497 405.74 temperature 10.0 270 > th dose independent rect. 11 7
498 405.74 atmosphere 1015.0 270 < th dose independent rect. 11 7
499 405.74 temperature 10.0 270 > th dose independent rect. 18 17
503 406.02 wind 1.0 270 > th dose independent rect. 5 19
507 406.19 precipitation 0.1 270 < th dose independent rect. 11 7
508 406.19 precipitation 0.1 270 < th dose dependent rect. 11 7
509 406.22 atmosphere 1015.0 270 < th dose independent rect. 12 17
513 406.48 atmosphere 995.0 270 > th dose dependent rect. 12 5
538 408.08 wind 1.0 270 > th dose independent rect. 4 21
566 408.97 atmosphere 995.0 270 > th dose independent rect. 18 17
578 409.88 atmosphere 995.0 270 > th dose independent rect. 11 7
673 415.52 wind 1.0 270 > th dose independent rect. 18 17
684 416.53 wind 1.0 270 > th dose independent rect. 11 7
686 416.66 radiation 40.0 10 < th dose dependent rect. 14 16
692 416.93 wind 1.0 270 > th dose independent rect. 6 17
804 419.84 wind 1.0 270 > th dose independent rect. 1 3
874 422.39 temperature 15.0 90 > th dose dependent rect. 3 3
896 422.93 humidity 50.0 10 > th dose independent rect. 6 8
898 422.94 wind 9.0 270 < th dose dependent rect. 5 7
904 423.15 precipitation 0.1 90 < th dose independent rect. 3 15
905 423.15 precipitation 0.1 90 < th dose dependent rect. 3 15
915 423.29 temperature 15.0 10 > th dose dependent rect. 3 3
922 423.34 temperature 10.0 90 > th dose independent rect. 3 15
923 423.34 atmosphere 1015.0 90 < th dose independent rect. 3 15
929 423.52 temperature 10.0 10 > th dose dependent rect. 6 21
938 423.72 wind 5.0 30 < th dose dependent rect. 3 3