BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0562400 Os12g0562400|AJ276277
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0562400 Similar to Phospholipase C (Fragment) 584 e-167
Os07g0694000 Similar to Phospholipase C (Fragment) 416 e-116
Os03g0289300 Similar to Phospholipase C (Fragment) 412 e-115
Os05g0127200 Similar to Phospholipase C (Fragment) 348 2e-96
AK072141 346 1e-95
>Os12g0562400 Similar to Phospholipase C (Fragment)
Length = 278
Score = 584 bits (1505), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 DDPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADV 60
DDPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADV
Sbjct: 1 DDPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADV 60
Query: 61 IRFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGC 120
IRFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGC
Sbjct: 61 IRFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGC 120
Query: 121 GYVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYT 180
GYVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYT
Sbjct: 121 GYVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYT 180
Query: 181 RVGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGG 240
RVGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGG
Sbjct: 181 RVGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGG 240
Query: 241 QTCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDFL 278
QTCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDFL
Sbjct: 241 QTCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDFL 278
>Os07g0694000 Similar to Phospholipase C (Fragment)
Length = 598
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/274 (70%), Positives = 229/274 (83%), Gaps = 2/274 (0%)
Query: 4 KFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADVIRF 63
K QQ A +Y+ LITI AGKPKG L DAL+ DP+KVRRLSLSE QLAK HG +++RF
Sbjct: 326 KMQQHLAPQYKHLITIKAGKPKGTLLDALQSDPEKVRRLSLSEQQLAKLADHHGTEIVRF 385
Query: 64 TQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGCGYV 123
TQ+N+LR+YPKGTR+ SSNY+P W HGAQMVAFNMQG+ +AL LM GF++ANGGCGYV
Sbjct: 386 TQRNLLRIYPKGTRVTSSNYNPFLGWVHGAQMVAFNMQGYGRALWLMHGFYKANGGCGYV 445
Query: 124 KKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYTRVG 183
KKPDFL++T P EVFDP S+ KKTLKVKVYMGDGWRMDF++THFD +SPPDFY RVG
Sbjct: 446 KKPDFLMQTDP--EVFDPKKSLSPKKTLKVKVYMGDGWRMDFTQTHFDQYSPPDFYARVG 503
Query: 184 IAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGGQTC 243
IAGV AD VMK+TR IED WVP+W+E+FTF LTVPE+A+LR+EVHEYDMSEK DFGGQT
Sbjct: 504 IAGVPADSVMKRTRAIEDNWVPVWEEDFTFKLTVPEIALLRVEVHEYDMSEKDDFGGQTV 563
Query: 244 LPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDF 277
LPVS+L GIRAV LHDR+G + +V+LLMRF+F
Sbjct: 564 LPVSDLIPGIRAVALHDRKGIKLNNVKLLMRFEF 597
>Os03g0289300 Similar to Phospholipase C (Fragment)
Length = 594
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/278 (67%), Positives = 231/278 (83%), Gaps = 1/278 (0%)
Query: 1 DDPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADV 60
D+ K Q EY+ LITI AGKPKG + DALK DPDKVRRLSLSE +LAK A HG ++
Sbjct: 318 DEKKMCQHHPLEYKHLITIKAGKPKGAVVDALKGDPDKVRRLSLSEQELAKVAAHHGRNI 377
Query: 61 IRFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGC 120
+ FT KN+LR+YPKGTR NSSNY+P W HGAQMVAFNMQG+ ++L LM GF++ANGGC
Sbjct: 378 VSFTHKNLLRIYPKGTRFNSSNYNPFLGWVHGAQMVAFNMQGYGRSLWLMHGFYKANGGC 437
Query: 121 GYVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYT 180
GYVKKPDF+++T P+G VFDP A +PVKKTLKVKVYMG+GW+ DF +T+FDT+SPPDFY
Sbjct: 438 GYVKKPDFMMQTCPDGNVFDPKADLPVKKTLKVKVYMGEGWQSDFKQTYFDTYSPPDFYA 497
Query: 181 RVGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGG 240
+VGIAGV +D VM+KT+ +ED WVP+W+EEF FPLTVPE+A+LR+EVHEYD+SE DFGG
Sbjct: 498 KVGIAGVPSDSVMQKTKAVEDSWVPVWEEEFVFPLTVPEIALLRVEVHEYDVSED-DFGG 556
Query: 241 QTCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDFL 278
QT LPVSEL+ GIR VPL D +G ++KSV+LLMRF+F+
Sbjct: 557 QTALPVSELRPGIRTVPLFDHKGLKFKSVKLLMRFEFV 594
>Os05g0127200 Similar to Phospholipase C (Fragment)
Length = 598
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 199/276 (72%), Gaps = 1/276 (0%)
Query: 2 DPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADVI 61
D K Q EYR LI I + K + LKVDPD V RLSL E KA +HGA +I
Sbjct: 323 DKKTQHGVDNEYRRLIAIPLTRRKHDMDQDLKVDPDMVTRLSLGEKAYEKAIVTHGAHII 382
Query: 62 RFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGCG 121
RFTQ+ +LR++P+ TRI SSNY+P+ W +G QMVA NMQGH + L L QG FRANGGCG
Sbjct: 383 RFTQRKLLRIFPRSTRITSSNYNPLMGWRYGVQMVAANMQGHGRKLWLTQGMFRANGGCG 442
Query: 122 YVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYTR 181
YVKKPD L+ P+ ++FDP + +PVK LKV VYMGDGWR DF KTHFD SPPDFY R
Sbjct: 443 YVKKPDILMNNDPD-KLFDPTSKLPVKTRLKVTVYMGDGWRFDFRKTHFDKCSPPDFYAR 501
Query: 182 VGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGGQ 241
VGIAGV AD M++T+ D W+P WD EF FPL+VPELA+LR+EVHE D +K DFGGQ
Sbjct: 502 VGIAGVEADTRMEQTKVKMDTWIPAWDHEFEFPLSVPELALLRVEVHESDNHQKDDFGGQ 561
Query: 242 TCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDF 277
TCLPV EL++GIR+V L D RG +SV+LLMRFDF
Sbjct: 562 TCLPVWELRRGIRSVRLCDHRGEPLRSVKLLMRFDF 597
>AK072141
Length = 617
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 199/276 (72%), Gaps = 1/276 (0%)
Query: 2 DPKFQQETACEYRELITIHAGKPKGHLKDALKVDPDKVRRLSLSETQLAKATASHGADVI 61
D K Q EYR LI I + K + LKVDPD V RLSL E KA +HGA +I
Sbjct: 342 DKKTQHGVDNEYRRLIAIPLTRRKHDMDQDLKVDPDMVTRLSLGEKAYEKAIVTHGAHII 401
Query: 62 RFTQKNILRVYPKGTRINSSNYDPMNAWTHGAQMVAFNMQGHDKALRLMQGFFRANGGCG 121
RFTQ+ +LR++P+ TRI SS+Y+P+ W +G QMVA NMQGH + L L QG FRANGGCG
Sbjct: 402 RFTQRKLLRIFPRSTRITSSDYNPLMGWRYGVQMVAANMQGHGRKLWLTQGMFRANGGCG 461
Query: 122 YVKKPDFLLRTGPNGEVFDPNASMPVKKTLKVKVYMGDGWRMDFSKTHFDTFSPPDFYTR 181
YVKKPD L+ P+ ++FDP + +PVK LKV VYMGDGWR DF KTHFD SPPDFY R
Sbjct: 462 YVKKPDILMNNDPD-KLFDPTSKLPVKTRLKVTVYMGDGWRFDFRKTHFDKCSPPDFYAR 520
Query: 182 VGIAGVRADCVMKKTRTIEDQWVPMWDEEFTFPLTVPELAVLRIEVHEYDMSEKHDFGGQ 241
VGIAGV AD M++T+ D W+P WD EF FPL+VPELA+LR+EVHE D +K DFGGQ
Sbjct: 521 VGIAGVEADTRMEQTKVKMDTWIPAWDHEFEFPLSVPELALLRVEVHESDNHQKDDFGGQ 580
Query: 242 TCLPVSELKQGIRAVPLHDRRGTRYKSVRLLMRFDF 277
TCLPV EL++GIR+V L D RG +SV+LLMRFDF
Sbjct: 581 TCLPVWELRRGIRSVRLCDHRGEPLRSVKLLMRFDF 616
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,933,195
Number of extensions: 411092
Number of successful extensions: 686
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 5
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)