BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0562100 Os12g0562100|AK064831
(591 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0562100 Conserved hypothetical protein 1098 0.0
Os05g0131500 476 e-134
Os06g0560000 Ferroportin1 family protein 110 2e-24
>Os12g0562100 Conserved hypothetical protein
Length = 591
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/591 (93%), Positives = 550/591 (93%)
Query: 1 MGMVXXXXXXXXXXSPPQGHLGRRCHLVVPGXXXXXXXXXXXXXXXXXXXXXNFVPRCYI 60
MGMV SPPQGHLGRRCHLVVPG NFVPRCYI
Sbjct: 1 MGMVTATAAAALLASPPQGHLGRRCHLVVPGLRLRPPASSSPPHAAPPLRLSNFVPRCYI 60
Query: 61 TNVEVDVSHTSEQEALDDHPPLLPACAIPVVHLRDVPDASPFPLHESASHSTDFEELPVL 120
TNVEVDVSHTSEQEALDDHPPLLPACAIPVVHLRDVPDASPFPLHESASHSTDFEELPVL
Sbjct: 61 TNVEVDVSHTSEQEALDDHPPLLPACAIPVVHLRDVPDASPFPLHESASHSTDFEELPVL 120
Query: 121 SEGELHTIAATPAHPAGLYALYASYLFGNLVEQLWNFAWPAALAILHPSLLPVAIVGFFT 180
SEGELHTIAATPAHPAGLYALYASYLFGNLVEQLWNFAWPAALAILHPSLLPVAIVGFFT
Sbjct: 121 SEGELHTIAATPAHPAGLYALYASYLFGNLVEQLWNFAWPAALAILHPSLLPVAIVGFFT 180
Query: 181 KLSVFIGAPIVGKLMDHFPRIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLK 240
KLSVFIGAPIVGKLMDHFPRIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLK
Sbjct: 181 KLSVFIGAPIVGKLMDHFPRIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLK 240
Query: 241 PWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGA 300
PWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGA
Sbjct: 241 PWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGA 300
Query: 301 SVFGLLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHALDSSRTPSEESICANL 360
SVFGLLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHALDSSRTPSEESICANL
Sbjct: 301 SVFGLLLSKYHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHALDSSRTPSEESICANL 360
Query: 361 LDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPS 420
LDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPS
Sbjct: 361 LDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPS 420
Query: 421 IVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGLIVQXXXXXXXXXXYWTGSISQRT 480
IVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGLIVQ YWTGSISQRT
Sbjct: 421 IVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGLIVQASLLSVALVVYWTGSISQRT 480
Query: 481 PLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMAII 540
PLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMAII
Sbjct: 481 PLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMAII 540
Query: 541 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQRELFMFDPHFQVEPI 591
ANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQRELFMFDPHFQVEPI
Sbjct: 541 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQRELFMFDPHFQVEPI 591
>Os05g0131500
Length = 591
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 323/452 (71%), Gaps = 3/452 (0%)
Query: 131 TPAHPAGLYALYASYLFGNLVEQLWNFAWPAALAILHP-SLLPVAIVGFFTKLSVFIGAP 189
TPA+PA + ALYA+ L GN EQLWNF WPAA+A+LHP S+LPVA++GFFTKL VF P
Sbjct: 139 TPAYPAAMNALYAACLAGNATEQLWNFTWPAAVAVLHPASILPVAVLGFFTKLVVFAAGP 198
Query: 190 IVGKLMDHFPRIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLKPWFIALVAA 249
+VG+L+ PRIP Y L A+Q A L+S A + YA A+ S ++L+PWF LVA+
Sbjct: 199 LVGELISSLPRIPAYRSLAAIQTAAHLVSVATITYAFAVHRAAAAS-LLLRPWFAVLVAS 257
Query: 250 GAIERLAGLALGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGASVFGLLLSK 309
A++RLA +ALG+ ERD+VV LAG RPVALA+ANA L+R+DL+CETVGAS+F LLLSK
Sbjct: 258 TAVDRLACVALGIIAERDFVVQLAGAGRPVALAKANATLSRVDLLCETVGASIFALLLSK 317
Query: 310 YHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHALDSSRTPSEESICANLLDVRKIVQN 369
+P+TC+K++C + +C+ P+L+ L +NR + D S + + + +RK V+
Sbjct: 318 NNPLTCIKLSCVISLCALPLLIFLCGEMNRLADGIFDHSENTTSHAEKTSSFSIRKTVEE 377
Query: 370 GLSAIRNGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGISPSIVGAFSGLC 429
++ +RNGW+EY +Q VLPAS+A VF+ FNVALAPGA+MT L+H+G+ PS++GAF G
Sbjct: 378 AVATVRNGWSEYMRQPVLPASLAYVFVCFNVALAPGALMTTFLIHQGVRPSVIGAFGGSS 437
Query: 430 SIMGLVATFISSSLVERVGILKAGAAGLIVQXXXXXXXXXXYWTGSISQRT-PLLIFLAA 488
+G++ATF ++ LV+ +GILKAGAAGLI Q Y TG++S+R L FL
Sbjct: 438 GAVGILATFATARLVKELGILKAGAAGLIAQSALLGAAVVVYLTGAVSRRAGALFAFLGL 497
Query: 489 IALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMAIIANDVSHFG 548
I SR GHM+Y +G Q++QTG PASKA LIG E++++SLAEL M+ +A++A+D SHFG
Sbjct: 498 IVASRAGHMAYSAIGLQVVQTGNPASKAKLIGATEIAVASLAELAMMAVAVVASDASHFG 557
Query: 549 FLAILSVSSVAGAAWMFCQWLGNPTDEQRELF 580
LA LS ++V AA M+C+WL NP+DE R +F
Sbjct: 558 ALAALSATAVTAAAGMYCRWLANPSDELRRIF 589
>Os06g0560000 Ferroportin1 family protein
Length = 484
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 207/465 (44%), Gaps = 35/465 (7%)
Query: 138 LYALYASYLFGNLVEQLWNFAWPAALAILHP-SLLPVAIVGFFTKLSVFIGAPIVGKLMD 196
L LY + ++W F+ + + P SLL A+ G +V PIVG ++D
Sbjct: 24 LRRLYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVD 83
Query: 197 HFPRIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLKPWFIALVA----AGAI 252
+ + +Q A+ ++A + + A+ + + + A P F+ALV +GA+
Sbjct: 84 RLAYLQVLRLWLLLQGAS-FVAAGVSVTAL--LVYGARLAAAGFPAFVALVVVTNVSGAL 140
Query: 253 ERLAGLALGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGASVFGLLLS---- 308
L+ LA + +ER+WVV++AG L N+V+ R+DL C+ + + G +S
Sbjct: 141 AALSTLAGTILIEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSM 200
Query: 309 -------KYHPVTCLKIACGLMI---CSFPVLVVLGQLINRFSCHALDSSRTPSEESICA 358
+ + + L + FP L Q+ R + ++ ++
Sbjct: 201 EASAAALAAWNLAAVWVQYWLFVSVYAGFPALSETSQISRRRADDDEAAAAAQPQK---- 256
Query: 359 NLLDVRKIVQNGLSAIRNGWNEYKQQTVLPASVATVFLNFNVALAPGAIMTALLMHRGIS 418
V ++ L + W Y +Q V+ VA FL F V L+ G +MTA L GI
Sbjct: 257 ----VERLWMTMLPCWES-WAVYARQEVVLPGVALAFLYFTV-LSFGTLMTATLDWEGIP 310
Query: 419 PSIVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGLIVQXXXXXXXXXXYWTGSISQ 478
++ G+ + +G+ AT++ + RV L+AG + Q W G +
Sbjct: 311 AYVISLARGVSAAVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAP 370
Query: 479 RTPLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAELVMLGMA 538
+ + +A SRLG +D+ Q++Q GVP S ++GG++ S+ S+ +L+ M
Sbjct: 371 LASAWMLMGGVAASRLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMG 430
Query: 539 IIANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQRELFMFD 583
II +D FG L +LS V AA M+ + ++ LF D
Sbjct: 431 IIVSDPRDFGELIVLSFFLVTCAAAMYTM---HVYRVRKHLFHLD 472
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,814,876
Number of extensions: 700549
Number of successful extensions: 2052
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 3
Length of query: 591
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 485
Effective length of database: 11,501,117
Effective search space: 5578041745
Effective search space used: 5578041745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)