BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0560600 Os12g0560600|AK059081
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0560600  Conserved hypothetical protein                      343   5e-95
Os03g0228500  Conserved hypothetical protein                       64   7e-11

>Os12g0560600 Conserved hypothetical protein
          Length = 191

 Score =  343 bits (880), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 171/191 (89%), Positives = 171/191 (89%)

Query: 1   MGSSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAE 60
           MGSSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAE
Sbjct: 1   MGSSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAE 60

Query: 61  KKTKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLSGIDMMXX 120
           KKTKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLSGIDMM  
Sbjct: 61  KKTKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLSGIDMMPP 120

Query: 121 XXXXXXXXHQERERNMAADGGEKSKEIDTPEXXXXXXXXXXYSDTTTKGAGAVPNGGATS 180
                   HQERERNMAADGGEKSKEIDTPE          YSDTTTKGAGAVPNGGATS
Sbjct: 121 PPSTSIPSHQERERNMAADGGEKSKEIDTPEKPSSSSRKRPYSDTTTKGAGAVPNGGATS 180

Query: 181 QHDGSEDSSQK 191
           QHDGSEDSSQK
Sbjct: 181 QHDGSEDSSQK 191



>Os03g0228500 Conserved hypothetical protein
          Length = 216

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 12  EVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAEKKTKRELFDAL 71
           EV+    +DG  DALR  II ++K NE ++ N +  V+QS V+N  G+EK   ++L DA+
Sbjct: 17  EVVGRAKDDGDFDALRRAIIRKVKDNEVLRSNIIAEVKQSVVINEDGSEKLKLKDLSDAI 76

Query: 72  RQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRL 112
            Q++ + ++ + S E+W +IL N     +I  T E+V+ R+
Sbjct: 77  YQDIGSKIMGQISDEIWGVILSN---EIDIRGTSETVYNRM 114



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,590,610
Number of extensions: 193699
Number of successful extensions: 402
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 153 (63.5 bits)