Os12g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.86 | 0.308 | 10.5 | -0.903 | 0.158 | 0.79 | 0.0332 | 0.253 | -0.345 | 13.5 | 21.5 | 2080 | -- | -- |
| 43.04 | 0.306 | 10.5 | -0.947 | 0.158 | 0.747 | -0.0274 | -- | -0.347 | 13.2 | 21.6 | 2090 | -- | -- |
| 42.86 | 0.305 | 10.5 | -0.904 | 0.158 | 0.791 | -- | 0.25 | -0.346 | 13.4 | 21.49 | 2086 | -- | -- |
| 43 | 0.305 | 10.5 | -0.968 | 0.16 | 0.762 | -- | -- | -0.362 | 13.4 | 21.55 | 2090 | -- | -- |
| 44.14 | 0.309 | 10.5 | -0.859 | -- | 0.778 | -- | 0.359 | -0.332 | -- | 21.4 | 1769 | -- | -- |
| 59.78 | 0.362 | 10.5 | -0.615 | 0.116 | -- | 0.394 | -- | -0.132 | 16.4 | -- | -- | -- | -- |
| 60 | 0.363 | 10.5 | -0.611 | 0.128 | -- | -- | -- | -0.13 | 14.5 | -- | -- | -- | -- |
| 44.41 | 0.31 | 10.5 | -0.952 | -- | 0.756 | -- | -- | -0.356 | -- | 21.5 | 1848 | -- | -- |
| 61.62 | 0.366 | 10.5 | -- | 0.163 | 0.433 | -- | -- | -0.207 | 13.6 | 22.5 | 2086 | -- | -- |
| 60.96 | 0.365 | 10.5 | -0.616 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 69.84 | 0.391 | 10.5 | -- | 0.14 | -- | -- | -- | -0.0618 | 14.6 | -- | -- | -- | -- |
| 62.18 | 0.367 | 10.5 | -- | -- | 0.456 | -- | -- | -0.203 | -- | 22.3 | 1405 | -- | -- |
| 70.99 | 0.393 | 10.5 | -- | -- | -- | -- | -- | -0.0647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 13 | 42.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 18 | 42.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 31 | 42.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 39 | 42.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 63 | 42.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 85 | 42.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 86 | 42.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 91 | 43.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 95 | 43.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 114 | 43.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 156 | 43.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 167 | 43.22 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 201 | 43.30 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 280 | 43.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 310 | 43.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 316 | 43.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 324 | 43.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 362 | 43.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 402 | 43.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 502 | 43.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 514 | 43.96 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 529 | 43.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 534 | 43.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 547 | 44.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 553 | 44.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 566 | 44.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 632 | 44.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 737 | 44.31 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 851 | 44.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 874 | 44.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 931 | 44.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 932 | 44.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 986 | 44.56 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |