BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0560600 Os12g0560600|AK059081
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56420.1  | chr1:21122772-21124234 REVERSE LENGTH=184          174   2e-44
AT1G12530.1  | chr1:4269122-4270771 REVERSE LENGTH=194             80   9e-16

>AT1G56420.1 | chr1:21122772-21124234 REVERSE LENGTH=184
          Length = 183

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 97/112 (86%)

Query: 3   SSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAEKK 62
           SSS V++PE+VL+ L NDGTIDALR++II QLKANE++K  T+ M E+S+VLNTPGAEK+
Sbjct: 2   SSSSVIKPEDVLEHLMNDGTIDALRLRIINQLKANEELKSTTIKMAEESKVLNTPGAEKQ 61

Query: 63  TKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLSG 114
           TKRELFDALRQELE PVLEKAS+ VWDLI+E  GLGKEI +T+E VFC LSG
Sbjct: 62  TKRELFDALRQELEGPVLEKASKSVWDLIIEKDGLGKEINETVERVFCHLSG 113



>AT1G12530.1 | chr1:4269122-4270771 REVERSE LENGTH=194
          Length = 193

 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 72/113 (63%), Gaps = 1/113 (0%)

Query: 1   MGSSSKVVRPEEVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAE 60
           MG + K+ + EEV++ L +DG  D LR+KII +LK NED++ N + +V++S  L   GA+
Sbjct: 2   MGMARKISK-EEVVEKLKDDGDFDRLRLKIIRRLKENEDLRNNMISVVKESTSLKRHGAQ 60

Query: 61  KKTKRELFDALRQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRLS 113
               R+L DA+ +E+ + +L + S  +W +I    G+  EI +T++SV+  LS
Sbjct: 61  NMKTRQLSDAIFEEVGSKMLSQLSDGLWGIIRSEDGMKNEIRETVQSVYATLS 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,499,718
Number of extensions: 121280
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 109 (46.6 bits)