Os03g0228500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0228500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.47 | 0.324 | 9.57 | -1.28 | 1.41 | -0.493 | 0.476 | -1.03 | -0.249 | 6.63 | 1008 | 9716 | -- | -- |
| 50.12 | 0.33 | 9.6 | -1.61 | 1.42 | -0.461 | 0.587 | -- | -0.321 | 6.58 | 1008 | 10455 | -- | -- |
| 48.04 | 0.323 | 9.57 | -1.26 | 1.41 | -0.494 | -- | -1.04 | -0.249 | 6.62 | 1008 | 9732 | -- | -- |
| 50.76 | 0.332 | 9.61 | -1.59 | 1.42 | -0.475 | -- | -- | -0.326 | 6.59 | 1008 | 10369 | -- | -- |
| 151.59 | 0.573 | 9.59 | -1.18 | -- | -0.562 | -- | -1.29 | -0.201 | -- | 1007 | 9857 | -- | -- |
| 58.4 | 0.358 | 9.58 | -1.42 | 1.43 | -- | 0.543 | -- | -0.214 | 6.57 | -- | -- | -- | -- |
| 59.14 | 0.36 | 9.58 | -1.41 | 1.43 | -- | -- | -- | -0.216 | 6.56 | -- | -- | -- | -- |
| 155.32 | 0.58 | 9.64 | -1.58 | -- | -0.543 | -- | -- | -0.299 | -- | 1007 | 9934 | -- | -- |
| 110.44 | 0.489 | 9.55 | -- | 1.41 | -0.218 | -- | -- | -0.0584 | 6.63 | 1001 | 11188 | -- | -- |
| 165.79 | 0.602 | 9.61 | -1.38 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 111.66 | 0.494 | 9.55 | -- | 1.41 | -- | -- | -- | -0.0589 | 6.62 | -- | -- | -- | -- |
| 213.91 | 0.681 | 9.58 | -- | -- | -0.265 | -- | -- | -0.0393 | -- | 1002 | 11157 | -- | -- |
| 215.79 | 0.686 | 9.58 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.84 | radiation | 10 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 3 | 46.08 | radiation | 10 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 4 | 46.08 | radiation | 20 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 11 | 46.27 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 21 |
| 14 | 46.32 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 16 | 46.32 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 51 | 46.44 | radiation | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 58 | 46.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 71 | 46.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 131 | 46.53 | radiation | 20 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 136 | 46.54 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 138 | 46.56 | radiation | 20 | 14400 | < th | dose independent | no | NA | NA |
| 245 | 46.56 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 282 | 46.58 | radiation | 20 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 310 | 46.64 | radiation | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 327 | 46.66 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 373 | 46.69 | radiation | 30 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 386 | 46.70 | radiation | 20 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 411 | 46.71 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 439 | 46.72 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 457 | 46.73 | radiation | 20 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 458 | 46.73 | radiation | 20 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 459 | 46.73 | radiation | 30 | 14400 | < th | dose dependent | sin | 5 | NA |
| 484 | 46.75 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 493 | 46.76 | radiation | 20 | 14400 | > th | dose dependent | rect. | 14 | 21 |
| 567 | 46.80 | radiation | 20 | 14400 | > th | dose independent | sin | 10 | NA |
| 583 | 46.80 | radiation | 10 | 14400 | > th | dose dependent | sin | 9 | NA |
| 693 | 46.84 | radiation | 40 | 14400 | > th | dose dependent | sin | 11 | NA |
| 807 | 46.89 | radiation | 10 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 880 | 46.92 | radiation | 30 | 14400 | < th | dose dependent | no | NA | NA |