BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0228500 Os03g0228500|AK101799
         (216 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0228500  Conserved hypothetical protein                      405   e-113
Os12g0560600  Conserved hypothetical protein                       65   5e-11

>Os03g0228500 Conserved hypothetical protein
          Length = 216

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MSDLRELGMRREPSRAEVVGRAKDDGDFDALRRAIIRKVKDNEVLRSNIIAEVKQSVVIN 60
           MSDLRELGMRREPSRAEVVGRAKDDGDFDALRRAIIRKVKDNEVLRSNIIAEVKQSVVIN
Sbjct: 1   MSDLRELGMRREPSRAEVVGRAKDDGDFDALRRAIIRKVKDNEVLRSNIIAEVKQSVVIN 60

Query: 61  EDGSEKLKLKDLSDAIYQDIGSKIMGQISDEIWGVILSNEIDIRGTSETVYNRMMNPEQQ 120
           EDGSEKLKLKDLSDAIYQDIGSKIMGQISDEIWGVILSNEIDIRGTSETVYNRMMNPEQQ
Sbjct: 61  EDGSEKLKLKDLSDAIYQDIGSKIMGQISDEIWGVILSNEIDIRGTSETVYNRMMNPEQQ 120

Query: 121 QDPPSKKLKRNAKEEQVSPAKASTSVAVQLEDDDPEEPPGFGFSDHQRSNIMATQQQQSS 180
           QDPPSKKLKRNAKEEQVSPAKASTSVAVQLEDDDPEEPPGFGFSDHQRSNIMATQQQQSS
Sbjct: 121 QDPPSKKLKRNAKEEQVSPAKASTSVAVQLEDDDPEEPPGFGFSDHQRSNIMATQQQQSS 180

Query: 181 NTENHNQVKPNEGEPNAVSC 200
           NTENHNQVKPNEGEPNAVSC
Sbjct: 181 NTENHNQVKPNEGEPNAVSC 200



>Os12g0560600 Conserved hypothetical protein
          Length = 191

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 17  EVVGRAKDDGDFDALRRAIIRKVKDNEVLRSNIIAEVKQSVVINEDGSEKLKLKDLSDAI 76
           EV+    +DG  DALR  II ++K NE ++ N +  V+QS V+N  G+EK   ++L DA+
Sbjct: 12  EVLDSLANDGTIDALRMKIIAQLKANEDMKKNTMMMVEQSRVLNTPGAEKKTKRELFDAL 71

Query: 77  YQDIGSKIMGQISDEIWGVILSN---EIDIRGTSETVYNRM 114
            Q++ + ++ + S E+W +IL N     +I  T E+V+ R+
Sbjct: 72  RQELENPVLEKASREVWDLILENGGLGKEITDTIESVFCRL 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,793,583
Number of extensions: 273203
Number of successful extensions: 898
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)