BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541500 Os12g0541500|AK067367
(1123 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0541500 Similar to Chloroplast polyprotein of elongati... 1892 0.0
Os08g0399600 Similar to Ethylene-responsive elongation fact... 80 7e-15
>Os12g0541500 Similar to Chloroplast polyprotein of elongation factor Ts
Length = 1123
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1123 (85%), Positives = 964/1123 (85%)
Query: 1 MTPVVHCSVGNISLFHIGSFRPSHEIQIRRFRSTERYSRVPSRRLLQPQRAFNLISIYKR 60
MTPVVHCSVGNISLFHIGSFRPSHEIQIRRFRSTERYSRVPSRRLLQPQRAFNLISIYKR
Sbjct: 1 MTPVVHCSVGNISLFHIGSFRPSHEIQIRRFRSTERYSRVPSRRLLQPQRAFNLISIYKR 60
Query: 61 SSWSSARRPRTLSAATVGTDVTVEDXXXXXXXXXXXXXXXDTAPDXXXXXXXXXXXXXXI 120
SSWSSARRPRTLSAATVGTDVTVED DTAPD I
Sbjct: 61 SSWSSARRPRTLSAATVGTDVTVEDPNPPPSGETSEESSEDTAPDTAEASEQAEASTSSI 120
Query: 121 PKAGRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFV 180
PKAGRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFV
Sbjct: 121 PKAGRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFV 180
Query: 181 KDISSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGRNTTATTSR 240
KDISSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGRNTTATTSR
Sbjct: 181 KDISSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGRNTTATTSR 240
Query: 241 GSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREEEAVALF 300
GSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREEEAVALF
Sbjct: 241 GSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREEEAVALF 300
Query: 301 TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQGWSRGTNAFEL 360
TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQGWSRGTNAFEL
Sbjct: 301 TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQGWSRGTNAFEL 360
Query: 361 AFRRNKEISAFLDQREKIIVPDVQEAAVASVGTELDAEVGIEQSPGKEPETGNAESVAID 420
AFRRNKEISAFLDQREKIIVPDVQEAAVASVGTELDAEVGIEQSPGKEPETGNAESVAID
Sbjct: 361 AFRRNKEISAFLDQREKIIVPDVQEAAVASVGTELDAEVGIEQSPGKEPETGNAESVAID 420
Query: 421 SSITEVKETDSIAAVEKDSEISKTESVETASSVVISEDDSTVDGKLVEPTASVSATETEI 480
SSITEVKETDSIAAVEKDSEISKTESVETASSVVISEDDSTVDGKLVEPTASVSATETEI
Sbjct: 421 SSITEVKETDSIAAVEKDSEISKTESVETASSVVISEDDSTVDGKLVEPTASVSATETEI 480
Query: 481 KEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATE 540
KEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATE
Sbjct: 481 KEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATE 540
Query: 541 AESKEDSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSTTVEGAAD 600
AESKEDSSEG DSTTVEGAAD
Sbjct: 541 AESKEDSSEGSVASTESVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTVEGAAD 600
Query: 601 DQTVESDSPPPEGVELSSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSESEDKXXXXXX 660
DQTVESDSPPPEGVELSSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSESEDK
Sbjct: 601 DQTVESDSPPPEGVELSSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSESEDKEPAAVP 660
Query: 661 XXXXXXXXKXXXXXXXXXXXXXXXXXXXXXLVKQLREATGAGMMDCKKALAESGGDIEKA 720
K LVKQLREATGAGMMDCKKALAESGGDIEKA
Sbjct: 661 EEVAASSEKTADVAVAGAEASTATATISPALVKQLREATGAGMMDCKKALAESGGDIEKA 720
Query: 721 QEFXXXXXXXXXXXXXXXXXXEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDL 780
QEF EGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDL
Sbjct: 721 QEFLRKKGLAAADKRAGRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDL 780
Query: 781 AMQVAACPQVQYISLDDVPEEVMKKETELEMQREDLLSKPEQIRSKIVEGRVKKRLGEYA 840
AMQVAACPQVQYISLDDVPEEVMKKETELEMQREDLLSKPEQIRSKIVEGRVKKRLGEYA
Sbjct: 781 AMQVAACPQVQYISLDDVPEEVMKKETELEMQREDLLSKPEQIRSKIVEGRVKKRLGEYA 840
Query: 841 LLEQPFIKNDKVTISEWVKQTIATIGENMKVNRFVRYNLGEGLEKRSQXXXXXXXXXXXX 900
LLEQPFIKNDKVTISEWVKQTIATIGENMKVNRFVRYNLGEGLEKRSQ
Sbjct: 841 LLEQPFIKNDKVTISEWVKQTIATIGENMKVNRFVRYNLGEGLEKRSQDFAAEVAAQTAA 900
Query: 901 XXXXXXXXXXXXXXXXXXXXXXXXXVAISAALVKQLRDETGAGMMDCKKALAETGGDIQQ 960
VAISAALVKQLRDETGAGMMDCKKALAETGGDIQQ
Sbjct: 901 KAPPAAPPKDDKPEETAETEEKKPAVAISAALVKQLRDETGAGMMDCKKALAETGGDIQQ 960
Query: 961 AQEFLRKKGLSSADKKSSRLTAEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVND 1020
AQEFLRKKGLSSADKKSSRLTAEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVND
Sbjct: 961 AQEFLRKKGLSSADKKSSRLTAEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVND 1020
Query: 1021 LAMQVVACPQVEYVSIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVL 1080
LAMQVVACPQVEYVSIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVL
Sbjct: 1021 LAMQVVACPQVEYVSIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVL 1080
Query: 1081 ALLEQPFIKDDSKTVKDLVKETIATLGENIKVRRFTRYTLGEN 1123
ALLEQPFIKDDSKTVKDLVKETIATLGENIKVRRFTRYTLGEN
Sbjct: 1081 ALLEQPFIKDDSKTVKDLVKETIATLGENIKVRRFTRYTLGEN 1123
>Os08g0399600 Similar to Ethylene-responsive elongation factor EF-Ts precursor
Length = 366
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 932 LVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKKGLSSADKKSSRLTAEGLIGAYIH 991
L+KQLR+ T A + D K +L DI AQ+ LRK+G+ A KKSSR AEGL+ A
Sbjct: 62 LIKQLRERTSAPIKDVKASLVSCNWDIDVAQKDLRKRGVVLAAKKSSRTAAEGLL-AIAQ 120
Query: 992 DNRIGCMIEINSETDFVARNEKFKELVNDLA 1022
D + ++E+N ETDFVARN+ F+ L + LA
Sbjct: 121 DEKRAAVVELNCETDFVARNDVFQYLASSLA 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.128 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,068,393
Number of extensions: 1134288
Number of successful extensions: 4393
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4378
Number of HSP's successfully gapped: 4
Length of query: 1123
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1011
Effective length of database: 11,187,833
Effective search space: 11310899163
Effective search space used: 11310899163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 161 (66.6 bits)