Os08g0399600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene-responsive elongation factor EF-Ts precursor.
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Os08g0399600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ethylene-responsive elongation factor EF-Ts precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.56 | 0.509 | 9.82 | 0.786 | 2 | 1.14 | 1.22 | 1.32 | 0.102 | 18.7 | 14.11 | 91 | -- | -- |
| 119.54 | 0.509 | 9.82 | 0.798 | 1.96 | 1.03 | 1.07 | -- | 0.111 | 18.7 | 12.72 | 127 | -- | -- |
| 121.24 | 0.513 | 9.82 | 0.78 | 2.01 | 1.11 | -- | 1.18 | 0.111 | 18.7 | 15.3 | 94 | -- | -- |
| 122.54 | 0.516 | 9.82 | 0.788 | 1.96 | 1.04 | -- | -- | 0.104 | 18.7 | 13.19 | 129 | -- | -- |
| 192.36 | 0.646 | 9.82 | 0.717 | -- | 2.18 | -- | 1.05 | -0.0589 | -- | -5.886 | 664 | -- | -- |
| 135.4 | 0.546 | 9.8 | 0.8 | 2.07 | -- | 1.15 | -- | 0.153 | 17.9 | -- | -- | -- | -- |
| 138.63 | 0.551 | 9.8 | 0.792 | 2.07 | -- | -- | -- | 0.157 | 17.9 | -- | -- | -- | -- |
| 191.38 | 0.644 | 9.81 | 0.629 | -- | 2.17 | -- | -- | -0.0905 | -- | -5.493 | 680 | -- | -- |
| 138.45 | 0.548 | 9.84 | -- | 1.9 | 1.03 | -- | -- | 0.0119 | 18.8 | 10 | 162 | -- | -- |
| 361.21 | 0.888 | 9.77 | 0.729 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 155.16 | 0.583 | 9.82 | -- | 2.06 | -- | -- | -- | 0.0689 | 17.9 | -- | -- | -- | -- |
| 201.76 | 0.662 | 9.83 | -- | -- | 2.19 | -- | -- | -0.168 | -- | -2.741 | 697 | -- | -- |
| 375.23 | 0.904 | 9.79 | -- | -- | -- | -- | -- | 0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.03 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 19 | 8 |
| 2 | 112.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 5 | 112.84 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 9 | 113.18 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 11 | 113.29 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |
| 14 | 113.43 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 16 | 113.51 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 6 |
| 17 | 113.51 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 21 | 113.65 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 14 |
| 25 | 113.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 42 | 114.31 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 15 |
| 48 | 114.49 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 16 |
| 56 | 114.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 60 | 114.75 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 72 | 114.99 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 80 | 115.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 97 | 115.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 99 | 115.34 | radiation | 30 | 90 | < th | dose independent | rect. | 4 | 19 |
| 100 | 115.35 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 5 |
| 130 | 115.55 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 138 | 115.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 157 | 115.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 209 | 116.00 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 7 |
| 241 | 116.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 243 | 116.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 245 | 116.18 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 246 | 116.19 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 3 |
| 272 | 116.28 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 23 |
| 273 | 116.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 305 | 116.47 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 10 |
| 361 | 116.74 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 364 | 116.75 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 365 | 116.75 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 366 | 116.76 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 6 |
| 369 | 116.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 370 | 116.77 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 5 |
| 431 | 117.05 | radiation | 30 | 90 | < th | dose independent | rect. | 15 | 20 |
| 436 | 117.07 | radiation | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 446 | 117.10 | radiation | 40 | 270 | < th | dose dependent | sin | 4 | NA |
| 483 | 117.20 | radiation | 30 | 90 | < th | dose independent | rect. | 13 | 22 |
| 504 | 117.23 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 18 |
| 518 | 117.32 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 533 | 117.40 | radiation | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 534 | 117.41 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 10 |
| 539 | 117.43 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 20 |
| 563 | 117.53 | radiation | 40 | 90 | < th | dose dependent | sin | 23 | NA |
| 643 | 117.66 | wind | 9 | 270 | < th | dose independent | rect. | 8 | 19 |
| 666 | 117.78 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 22 |
| 671 | 117.79 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 761 | 117.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 784 | 117.98 | wind | 5 | 270 | < th | dose independent | rect. | 3 | 4 |
| 789 | 117.98 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 791 | 117.99 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 11 |
| 807 | 118.00 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |