BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0538900 Os12g0538900|AK066962
(929 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0538900 Armadillo-like helical domain containing protein 1780 0.0
Os09g0135100 Conserved hypothetical protein 126 8e-29
>Os12g0538900 Armadillo-like helical domain containing protein
Length = 929
Score = 1780 bits (4610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/912 (96%), Positives = 880/912 (96%)
Query: 1 MDSRSINLRGFAGNAGKNIMQGIGGFVFGNERSESKEDSYVERFLDRISNGTISDDRRSA 60
MDSRSINLRGFAGNAGKNIMQGIGGFVFGNERSESKEDSYVERFLDRISNGTISDDRRSA
Sbjct: 1 MDSRSINLRGFAGNAGKNIMQGIGGFVFGNERSESKEDSYVERFLDRISNGTISDDRRSA 60
Query: 61 MTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDVELVRGALETFVSALTPIETSQGP 120
MTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDVELVRGALETFVSALTPIETSQGP
Sbjct: 61 MTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDVELVRGALETFVSALTPIETSQGP 120
Query: 121 KTEVQPASVNSDLLSRETENIXXXXXXXXEEDFYVRYYTIQLLTALLTNSLKRLQEAILL 180
KTEVQPASVNSDLLSRETENI EEDFYVRYYTIQLLTALLTNSLKRLQEAILL
Sbjct: 121 KTEVQPASVNSDLLSRETENISLLLSLLSEEDFYVRYYTIQLLTALLTNSLKRLQEAILL 180
Query: 181 IPRGITVLMDMLMDREVIRNEALLLLTYLTRDAEEIQKIVVFEGVFEKIFSIIREEGYSD 240
IPRGITVLMDMLMDREVIRNEALLLLTYLTRDAEEIQKIVVFEGVFEKIFSIIREEGYSD
Sbjct: 181 IPRGITVLMDMLMDREVIRNEALLLLTYLTRDAEEIQKIVVFEGVFEKIFSIIREEGYSD 240
Query: 241 GGVVVQDCLELLNNLIRQNASNQMLLKETIGFDPLIAILKIRRGSAFNFTQQKTVNLLGA 300
GGVVVQDCLELLNNLIRQNASNQMLLKETIGFDPLIAILKIRRGSAFNFTQQKTVNLLGA
Sbjct: 241 GGVVVQDCLELLNNLIRQNASNQMLLKETIGFDPLIAILKIRRGSAFNFTQQKTVNLLGA 300
Query: 301 LDTVELLLMXXXXXXEPGKDANKTTNQTALAQKNILDHLLLLGVESQWAPVALRCMALRC 360
LDTVELLLM EPGKDANKTTNQTALAQKNILDHLLLLGVESQWAPVALRCMALRC
Sbjct: 301 LDTVELLLMGGGSSGEPGKDANKTTNQTALAQKNILDHLLLLGVESQWAPVALRCMALRC 360
Query: 361 IGNLVLRNPQNLDSLASKQVGEDPHVQPALSAIFSIILRTSLAQEFVAADYVFKCFCEKN 420
IGNLVLRNPQNLDSLASKQVGEDPHVQPALSAIFSIILRTSLAQEFVAADYVFKCFCEKN
Sbjct: 361 IGNLVLRNPQNLDSLASKQVGEDPHVQPALSAIFSIILRTSLAQEFVAADYVFKCFCEKN 420
Query: 421 PGGQALLASTIAPHPNQAHATFGATTDMPFGSILLQALVSSDDNGDMEACCRASSVLSHI 480
PGGQALLASTIAPHPNQAHATFGATTDMPFGSILLQALVSSDDNGDMEACCRASSVLSHI
Sbjct: 421 PGGQALLASTIAPHPNQAHATFGATTDMPFGSILLQALVSSDDNGDMEACCRASSVLSHI 480
Query: 481 IKDNLQCKDRVLQIQLETPAPSLGRTEPLLHRIVTCLSIAASAEGENGQSGQPEESYIQP 540
IKDNLQCKDRVLQIQLETPAPSLGRTEPLLHRIVTCLSIAASAEGENGQSGQPEESYIQP
Sbjct: 481 IKDNLQCKDRVLQIQLETPAPSLGRTEPLLHRIVTCLSIAASAEGENGQSGQPEESYIQP 540
Query: 541 VILRLLIVWLVDCANAVDCLLESAVHLNYIIELASSKRYSACVRGLAAVVLGACVLYNAS 600
VILRLLIVWLVDCANAVDCLLESAVHLNYIIELASSKRYSACVRGLAAVVLGACVLYNAS
Sbjct: 541 VILRLLIVWLVDCANAVDCLLESAVHLNYIIELASSKRYSACVRGLAAVVLGACVLYNAS 600
Query: 601 REKGRDAFAVADAISQKIGLSTYFLRFDELRKRFAHSSSGQQNRKQLSRSSANSMSDFQE 660
REKGRDAFAVADAISQKIGLSTYFLRFDELRKRFAHSSSGQQNRKQLSRSSANSMSDFQE
Sbjct: 601 REKGRDAFAVADAISQKIGLSTYFLRFDELRKRFAHSSSGQQNRKQLSRSSANSMSDFQE 660
Query: 661 IEEEEINKGDQHPVLSEIFDSHFVSFLSKLETDIRDNIMDIFSRTKTATAIIPAELEQKN 720
IEEEEINKGDQHPVLSEIFDSHFVSFLSKLETDIRDNIMDIFSRTKTATAIIPAELEQKN
Sbjct: 661 IEEEEINKGDQHPVLSEIFDSHFVSFLSKLETDIRDNIMDIFSRTKTATAIIPAELEQKN 720
Query: 721 GEVDGEYIKRLKSFVEKQCNEMQDLLGRNAMLAEELVRTGGGNSADSLQKPSSGRERVQI 780
GEVDGEYIKRLKSFVEKQCNEMQDLLGRNAMLAEELVRTGGGNSADSLQKPSSGRERVQI
Sbjct: 721 GEVDGEYIKRLKSFVEKQCNEMQDLLGRNAMLAEELVRTGGGNSADSLQKPSSGRERVQI 780
Query: 781 ESLRQELEGATRRIEALRAEHTQIEAEASNQRNLAAKLESDLKSLSDAYNSLEQANFRLD 840
ESLRQELEGATRRIEALRAEHTQIEAEASNQRNLAAKLESDLKSLSDAYNSLEQANFRLD
Sbjct: 781 ESLRQELEGATRRIEALRAEHTQIEAEASNQRNLAAKLESDLKSLSDAYNSLEQANFRLD 840
Query: 841 SEVKALRQGGSAPYPDVXXXXXXXXXXXXXXXXXXLNDLLVCLGQEQSKVEKLSTRLAEL 900
SEVKALRQGGSAPYPDV LNDLLVCLGQEQSKVEKLSTRLAEL
Sbjct: 841 SEVKALRQGGSAPYPDVEAIKAEAKEEAEKESEAELNDLLVCLGQEQSKVEKLSTRLAEL 900
Query: 901 GEDVDTLLQGIG 912
GEDVDTLLQGIG
Sbjct: 901 GEDVDTLLQGIG 912
>Os09g0135100 Conserved hypothetical protein
Length = 404
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 72/106 (67%), Gaps = 25/106 (23%)
Query: 13 GNAGKNIMQGIGGFVFGNERSESKEDSYVERFLDRISNGTISDDRRSAMTELQSLVAESR 72
GNA ++GIGGFVFGNERSESKEDSYVERFLD ISNGTI DD R
Sbjct: 314 GNAAVVQVKGIGGFVFGNERSESKEDSYVERFLDCISNGTIPDDSR-------------- 359
Query: 73 SAQMSFGAMGFPVLLNVLKEDREDVELVRGALETFVSALTPIETSQ 118
PVLLNVLKED ED ELVRGALETFVSA+TPIETS+
Sbjct: 360 -----------PVLLNVLKEDHEDAELVRGALETFVSAVTPIETSK 394
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,529,749
Number of extensions: 1016765
Number of successful extensions: 3680
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3678
Number of HSP's successfully gapped: 2
Length of query: 929
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 819
Effective length of database: 11,292,261
Effective search space: 9248361759
Effective search space used: 9248361759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)