Os12g0538900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os12g0538900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.88 | 0.225 | 11.4 | -0.273 | 0.13 | 0.434 | 0.159 | -1.14 | 0.204 | 0.738 | 30.32 | 4864 | -- | -- |
| 22.98 | 0.223 | 11.3 | -0.0714 | 0.128 | 0.302 | 0.187 | -- | 0.203 | 0.503 | 30.6 | 4897 | -- | -- |
| 21.84 | 0.218 | 11.4 | -0.449 | 0.165 | 0.473 | -- | -1.53 | 0.127 | 0.474 | 30.38 | 5893 | -- | -- |
| 22.84 | 0.223 | 11.3 | -0.0783 | 0.14 | 0.27 | -- | -- | 0.178 | 0.225 | 30.6 | 5755 | -- | -- |
| 23.23 | 0.224 | 11.4 | -0.484 | -- | 0.47 | -- | -1.8 | 0.156 | -- | 30.3 | 5755 | -- | -- |
| 26.83 | 0.243 | 11.3 | 0.00846 | 0.148 | -- | 0.202 | -- | 0.142 | 0.297 | -- | -- | -- | -- |
| 27.01 | 0.243 | 11.3 | 0.000482 | 0.148 | -- | -- | -- | 0.141 | 0.406 | -- | -- | -- | -- |
| 23.95 | 0.228 | 11.3 | -0.0891 | -- | 0.283 | -- | -- | 0.185 | -- | 30.45 | 5635 | -- | -- |
| 23 | 0.223 | 11.3 | -- | 0.138 | 0.262 | -- | -- | 0.187 | 23.8 | 30.57 | 5755 | -- | -- |
| 28.37 | 0.249 | 11.3 | 0.00549 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 27.01 | 0.243 | 11.3 | -- | 0.148 | -- | -- | -- | 0.141 | 0.406 | -- | -- | -- | -- |
| 24.11 | 0.229 | 11.3 | -- | -- | 0.274 | -- | -- | 0.196 | -- | 30.4 | 5635 | -- | -- |
| 28.37 | 0.249 | 11.3 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 4 | 22.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 5 | 22.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 7 | 22.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 13 | 22.38 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 15 | 22.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 17 | 22.42 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 19 | 22.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 20 | 22.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 22 | 22.44 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 25 | 22.45 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 26 | 22.45 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 34 | 22.46 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 37 | 22.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 40 | 22.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 48 | 22.50 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 13 |
| 49 | 22.51 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 54 | 22.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 73 | 22.55 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 78 | 22.57 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 86 | 22.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 89 | 22.59 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 111 | 22.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 131 | 22.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 132 | 22.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 148 | 22.69 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 158 | 22.70 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 187 | 22.72 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 223 | 22.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 268 | 22.79 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 271 | 22.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 21 |
| 273 | 22.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 280 | 22.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 288 | 22.81 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 292 | 22.81 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 335 | 22.82 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 353 | 22.83 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 376 | 22.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 378 | 22.84 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 393 | 22.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 396 | 22.86 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 423 | 22.90 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 433 | 22.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 456 | 22.93 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 506 | 22.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 521 | 22.96 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 548 | 22.97 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 576 | 22.99 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 593 | 23.00 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 594 | 23.00 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 598 | 23.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 605 | 23.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 608 | 23.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 619 | 23.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 621 | 23.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 623 | 23.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 21 |
| 624 | 23.02 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 626 | 23.02 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 627 | 23.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 643 | 23.03 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 671 | 23.03 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 672 | 23.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 683 | 23.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 729 | 23.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 732 | 23.08 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 733 | 23.08 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 783 | 23.10 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 788 | 23.10 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 799 | 23.11 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 841 | 23.12 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 867 | 23.14 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 869 | 23.14 | wind | 9.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 896 | 23.15 | temperature | 30.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 898 | 23.15 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 912 | 23.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 938 | 23.16 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 940 | 23.16 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 965 | 23.17 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 998 | 23.18 | temperature | 30.0 | 4320 | < th | dose independent | sin | 13 | NA |