BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0512200 Os12g0512200|Os12g0512200
         (129 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0512200  Hypothetical protein                                231   9e-62
Os11g0529600                                                      218   9e-58
Os11g0558100                                                      206   3e-54
Os10g0117400                                                      129   8e-31
Os06g0523600  Hypothetical protein                                121   1e-28

>Os12g0512200 Hypothetical protein
          Length = 129

 Score =  231 bits (589), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 115/129 (89%)

Query: 1   MAVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60
           MAVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH
Sbjct: 1   MAVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60

Query: 61  AEHAVQNQAPVEGQHRRKDMTEEVTKQVYQAXXXXXXXXXXXXXXTRRVADQFGVRIRSV 120
           AEHAVQNQAPVEGQHRRKDMTEEVTKQVYQA              TRRVADQFGVRIRSV
Sbjct: 61  AEHAVQNQAPVEGQHRRKDMTEEVTKQVYQALLNDNKNGKLGKKDTRRVADQFGVRIRSV 120

Query: 121 QRLWKRGKI 129
           QRLWKRGKI
Sbjct: 121 QRLWKRGKI 129



>Os11g0529600 
          Length = 131

 Score =  218 bits (555), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 109/126 (86%)

Query: 1   MAVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60
           MAVPAVAGFDLNV LEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH
Sbjct: 1   MAVPAVAGFDLNVCLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60

Query: 61  AEHAVQNQAPVEGQHRRKDMTEEVTKQVYQAXXXXXXXXXXXXXXTRRVADQFGVRIRSV 120
           AEH VQNQAPVEGQHRRKDMTEEVTKQVYQA              TRRVADQFGV IRSV
Sbjct: 61  AEHDVQNQAPVEGQHRRKDMTEEVTKQVYQALLKDNKNGKLGKKDTRRVADQFGVHIRSV 120

Query: 121 QRLWKR 126
           QRLWKR
Sbjct: 121 QRLWKR 126



>Os11g0558100 
          Length = 123

 Score =  206 bits (524), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 106/123 (86%)

Query: 1   MAVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60
           MAVPAV GFDLNVRLEED+DGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH
Sbjct: 1   MAVPAVFGFDLNVRLEEDKDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNH 60

Query: 61  AEHAVQNQAPVEGQHRRKDMTEEVTKQVYQAXXXXXXXXXXXXXXTRRVADQFGVRIRSV 120
           AEHAV NQAP+EGQHRRK+MTEEVTKQVY+A              TRRVADQFGV IRSV
Sbjct: 61  AEHAVHNQAPIEGQHRRKNMTEEVTKQVYKALLKDSKNGKLGKKDTRRVADQFGVHIRSV 120

Query: 121 QRL 123
           QRL
Sbjct: 121 QRL 123



>Os10g0117400 
          Length = 225

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 80/115 (69%), Gaps = 5/115 (4%)

Query: 15  LEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNHAEHAVQNQAPVEGQ 74
           + +D DG   F LNEP LE  + NGFDLN+PL+EFGVVD D++Q+ AEH V   AP+E  
Sbjct: 1   MAKDGDGEFAFDLNEPPLE--HGNGFDLNLPLNEFGVVDFDYVQHLAEHVV---APIEVN 55

Query: 75  HRRKDMTEEVTKQVYQAXXXXXXXXXXXXXXTRRVADQFGVRIRSVQRLWKRGKI 129
           HRRKDMTEEV KQVYQA              TR VADQFG+ IR+VQRLWKRGKI
Sbjct: 56  HRRKDMTEEVRKQVYQALLARSKNGKLGKKDTRVVADQFGLHIRAVQRLWKRGKI 110



>Os06g0523600 Hypothetical protein
          Length = 89

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 65/88 (73%), Gaps = 23/88 (26%)

Query: 2  AVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVNGFDLNMPLDEFGVVDLDFLQNHA 61
          AVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVN                       
Sbjct: 25 AVPAVAGFDLNVRLEEDEDGNVPFHLNEPILEDHNVN----------------------- 61

Query: 62 EHAVQNQAPVEGQHRRKDMTEEVTKQVY 89
          EHAVQNQAPVEGQHRRKDMTEEVTKQVY
Sbjct: 62 EHAVQNQAPVEGQHRRKDMTEEVTKQVY 89



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,998,028
Number of extensions: 143533
Number of successful extensions: 335
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)