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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0512200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.059) R2 : 0.628
β1 : 1.15 (0.211) R2dD : 0.0253 R2D : 0.0163
β2 : 2.13 (0.163) R2dC : 0.166 R2C : 0.319
β3 : 3.72 (0.247) R2dE : 0.256 R2E : 0.387
β4 : 4.89 (0.693) R2dD*C : 0.0408 R2D*C : 0.0256
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.133) R2dN8 : 0.00159 R2N8 : 0.0121
σ : 1.07
deviance : 532.1
__
_____
C
peak time of C : 6.1
E
wheather : temperature
threshold : 25
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.19
open length of G : 2.82

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
527.73 1.08 3.77 0.93 2.13 3.74 5.05 -4.12 0.123 6.1 25.01 10 4.02 2.98
532.1 1.07 3.78 1.15 2.13 3.72 4.89 -- 0.148 6.1 25 10 4.19 2.82
588.15 1.13 3.78 0.993 2.21 3.72 -- -3.8 0.132 6.04 25.05 10 4.03 2.95
587.42 1.13 3.77 1.19 2.17 3.46 -- -- 0.202 5.97 24.96 11 4.72 2.92
794.29 1.31 3.85 0.941 -- 4.33 -- -3.99 0.0124 -- 24.58 8 4.2 2.8
796.04 1.32 3.58 1.2 3.07 -- 3.75 -- 0.94 6.08 -- -- -- --
830.44 1.35 3.59 1.23 3.09 -- -- -- 0.926 6.03 -- -- -- --
743.65 1.27 3.74 1.18 -- 3.46 -- -- 0.559 -- 14.2 12 4.8 3.07
626.14 1.17 3.79 -- 2.25 3.55 -- -- 0.128 5.89 25 13 4.62 2.88
1325.55 1.7 3.64 1.32 -- -- -- -- 0.996 -- -- -- -- --
870.59 1.38 3.62 -- 3.11 -- -- -- 0.788 6.01 -- -- -- --
779.46 1.3 3.76 -- -- 3.49 -- -- 0.452 -- 1.536 17 4.72 3.12
1371.78 1.73 3.67 -- -- -- -- -- 0.849 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 528.56 temperature 25.0 10 > th dose independent rect. 4 3
3 541.58 atmosphere 1000.0 270 > th dose dependent rect. 3 2
5 542.39 wind 1.0 270 > th dose independent rect. 3 2
6 543.48 atmosphere 1000.0 270 > th dose dependent rect. 2 4
8 550.47 atmosphere 995.0 270 > th dose dependent rect. 1 6
17 559.49 wind 1.0 270 > th dose independent rect. 1 6
27 564.80 wind 1.0 10 > th dose independent rect. 4 3
37 572.25 temperature 20.0 10 > th dose dependent rect. 4 3
38 572.36 temperature 10.0 270 > th dose dependent rect. 2 5
39 572.64 temperature 20.0 270 > th dose dependent rect. 3 2
44 574.57 radiation 10.0 270 < th dose independent rect. 2 5
49 575.33 temperature 15.0 270 > th dose independent rect. 7 19
64 580.38 atmosphere 1000.0 270 > th dose independent rect. 2 5
71 581.09 radiation 20.0 270 < th dose dependent rect. 2 5
74 581.61 wind 5.0 270 < th dose independent rect. 2 5
78 583.17 atmosphere 1000.0 270 > th dose independent rect. 3 2
83 584.17 humidity 70.0 270 > th dose independent rect. 2 5
89 584.73 temperature 10.0 270 > th dose independent rect. 2 5
91 584.73 temperature 30.0 270 < th dose independent rect. 2 5
92 584.73 humidity 50.0 270 > th dose independent rect. 2 5
95 584.73 atmosphere 1015.0 270 < th dose independent rect. 2 5
120 586.10 wind 9.0 270 < th dose independent rect. 7 19
124 586.53 precipitation 0.1 270 < th dose independent rect. 2 5
125 586.53 precipitation 0.1 270 < th dose dependent rect. 2 5
131 587.19 precipitation 0.1 270 < th dose independent rect. 7 18
132 587.19 precipitation 0.1 270 < th dose dependent rect. 7 18
144 588.29 temperature 15.0 270 > th dose independent rect. 18 8
147 589.24 wind 5.0 270 < th dose independent rect. 3 2
182 591.79 radiation 1.0 270 < th dose dependent rect. 3 2
187 592.40 radiation 1.0 270 < th dose independent rect. 3 2
196 593.33 temperature 10.0 270 > th dose independent rect. 3 2
198 593.33 temperature 30.0 270 < th dose independent rect. 3 2
199 593.33 humidity 50.0 270 > th dose independent rect. 3 2
203 593.33 atmosphere 1010.0 270 < th dose independent rect. 3 2
224 595.92 radiation 1.0 270 < th dose dependent rect. 18 8
227 596.50 radiation 40.0 270 < th dose independent rect. 13 17
228 596.52 radiation 1.0 270 < th dose independent rect. 18 8
236 597.35 precipitation 0.1 270 < th dose independent rect. 3 2
237 597.35 precipitation 0.1 270 < th dose dependent rect. 3 2
239 597.41 precipitation 0.1 270 < th dose independent rect. 18 8
240 597.41 precipitation 0.1 270 < th dose dependent rect. 18 8
241 597.45 humidity 60.0 270 > th dose independent rect. 18 8
244 597.85 temperature 30.0 270 < th dose independent rect. 18 8
250 598.38 humidity 90.0 10 < th dose independent rect. 4 3
258 598.51 temperature 10.0 270 > th dose independent rect. 2 16
259 598.51 atmosphere 1015.0 270 < th dose independent rect. 2 16
260 598.58 wind 9.0 270 < th dose independent rect. 18 8
261 598.58 precipitation 0.1 270 < th dose independent rect. 5 22
262 598.58 precipitation 0.1 270 < th dose dependent rect. 5 22
276 598.90 atmosphere 995.0 270 > th dose independent rect. 18 8
279 599.18 wind 9.0 270 < th dose independent rect. 5 22
280 599.26 wind 9.0 270 < th dose independent rect. 2 16
282 599.61 wind 9.0 1440 < th dose independent rect. 5 3
283 599.61 temperature 10.0 1440 > th dose independent rect. 5 3
286 599.61 temperature 30.0 1440 < th dose independent rect. 5 3
290 599.61 humidity 50.0 1440 > th dose independent rect. 5 3
295 599.61 atmosphere 995.0 1440 > th dose independent rect. 5 3
296 599.61 atmosphere 1015.0 1440 < th dose independent rect. 5 3
297 599.61 temperature 10.0 1440 > th dose independent rect. 8 21
300 599.67 wind 9.0 270 < th dose dependent rect. 2 5
305 600.55 humidity 50.0 270 > th dose dependent rect. 2 5
320 601.88 wind 7.0 90 < th dose independent rect. 15 16
323 602.31 precipitation 0.1 90 < th dose independent rect. 7 8
325 602.31 precipitation 0.1 90 < th dose dependent rect. 7 8
333 602.82 precipitation 0.1 270 < th dose independent rect. 2 16
334 602.82 precipitation 0.1 270 < th dose dependent rect. 2 16
337 603.00 radiation 20.0 90 < th dose independent rect. 15 16
357 604.02 radiation 1.0 90 > th dose independent rect. 7 8
360 604.32 temperature 10.0 90 > th dose independent rect. 7 8
361 604.32 atmosphere 1015.0 90 < th dose independent rect. 7 8
362 604.32 temperature 10.0 90 > th dose independent rect. 15 16
368 604.46 radiation 40.0 90 < th dose independent rect. 15 16
382 605.28 atmosphere 995.0 270 > th dose independent rect. 7 19
391 606.02 wind 9.0 90 < th dose independent rect. 7 8
400 606.68 atmosphere 995.0 90 > th dose independent rect. 7 8
412 607.43 wind 1.0 270 > th dose independent rect. 13 17
468 609.55 atmosphere 1015.0 270 < th dose independent rect. 7 18
479 610.02 humidity 50.0 270 > th dose dependent rect. 3 2
480 610.04 temperature 15.0 270 > th dose independent rect. 7 6
481 610.04 precipitation 0.1 270 < th dose independent rect. 7 6
482 610.04 precipitation 0.1 270 < th dose dependent rect. 7 6
483 610.05 wind 9.0 270 < th dose independent rect. 13 18
488 610.09 atmosphere 995.0 270 > th dose independent rect. 7 6
489 610.09 atmosphere 1015.0 270 < th dose independent rect. 7 6
490 610.09 temperature 10.0 270 > th dose independent rect. 13 18
491 610.14 wind 9.0 270 < th dose independent rect. 7 6
511 611.25 humidity 50.0 270 > th dose independent rect. 7 19
513 611.27 atmosphere 1000.0 10 > th dose independent rect. 3 6
520 611.52 radiation 1.0 270 > th dose independent rect. 7 6
530 611.87 temperature 10.0 270 > th dose dependent rect. 19 7
552 613.12 radiation 40.0 90 < th dose dependent rect. 15 16
580 613.78 radiation 1.0 270 < th dose dependent rect. 6 20
617 614.32 radiation 1.0 270 < th dose independent rect. 2 11
654 615.28 atmosphere 995.0 90 > th dose independent rect. 15 16
656 615.34 wind 1.0 90 > th dose independent rect. 7 8
681 615.73 wind 1.0 30 > th dose independent rect. 15 16
694 615.87 atmosphere 995.0 270 > th dose independent rect. 2 16
752 617.35 wind 1.0 270 > th dose independent rect. 7 6
764 618.00 wind 1.0 270 > th dose independent rect. 7 18
786 618.83 radiation 10.0 10 < th dose independent rect. 4 4
831 619.27 temperature 15.0 270 > th dose independent rect. 21 15
873 620.91 wind 9.0 270 < th dose dependent rect. 18 8
915 621.80 precipitation 0.1 90 < th dose independent rect. 15 16
916 621.80 precipitation 0.1 90 < th dose dependent rect. 15 16
918 621.82 precipitation 0.1 270 < th dose independent rect. 13 18
919 621.82 precipitation 0.1 270 < th dose dependent rect. 13 18
934 622.28 temperature 15.0 10 > th dose independent rect. 9 18
950 622.84 humidity 50.0 270 > th dose independent rect. 7 6
969 623.46 radiation 10.0 90 < th dose independent rect. 3 17
977 623.71 humidity 70.0 10 > th dose independent rect. 3 6
1000 624.26 humidity 90.0 90 < th dose independent rect. 7 8