BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0511300 Os12g0511300|AK121419
(343 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0511300 Conserved hypothetical protein 467 e-132
Os03g0199000 Conserved hypothetical protein 129 4e-30
>Os12g0511300 Conserved hypothetical protein
Length = 343
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/323 (76%), Positives = 246/323 (76%)
Query: 21 NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRRXXXXX 80
NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRR
Sbjct: 21 NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRRLAAIG 80
Query: 81 XXXXXXXXXXXXXXXXXXXXXIPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV 140
IPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV
Sbjct: 81 LLEALGLAAGMSAGAMLPGPAIPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV 140
Query: 141 ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV 200
ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV
Sbjct: 141 ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV 200
Query: 201 NSFGSGXXXXXXXXXXXXXXXXKGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL 260
NSFGSG KGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL
Sbjct: 201 NSFGSGFQALFVFLLLPLLSNLKGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL 260
Query: 261 FILVNMAFNIXXXXXXXXXXXXXXXXXXXXXXPISIYILSLPLPYIPHGAELSSSFXXXX 320
FILVNMAFNI PISIYILSLPLPYIPHGAELSSSF
Sbjct: 261 FILVNMAFNIALLNLVKLSSALVASLTATSAVPISIYILSLPLPYIPHGAELSSSFILGG 320
Query: 321 XXXXXXXXXYNLPQSSKKQSKIE 343
YNLPQSSKKQSKIE
Sbjct: 321 VVLLMGLIIYNLPQSSKKQSKIE 343
>Os03g0199000 Conserved hypothetical protein
Length = 156
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 75/126 (59%)
Query: 191 KGRRPDIFVVNSFGSGXXXXXXXXXXXXXXXXKGIKFAELPAYLNGGAECFLNVDDSLID 250
+G+RPDIFVVNSFGSG KGI AELPAY+N GA CFLN+ +L D
Sbjct: 4 QGKRPDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPLAELPAYINRGAACFLNIGGNLKD 63
Query: 251 CGGAPFLPLLFILVNMAFNIXXXXXXXXXXXXXXXXXXXXXXPISIYILSLPLPYIPHGA 310
C GAP LPLLFI +NMAFNI P+SIY+LSLPLPYIP G
Sbjct: 64 CHGAPLLPLLFIAMNMAFNISVLNLVKMSTALVASLTATLAVPLSIYVLSLPLPYIPGGT 123
Query: 311 ELSSSF 316
LS+SF
Sbjct: 124 NLSTSF 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,653,682
Number of extensions: 228341
Number of successful extensions: 493
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 241
Effective length of database: 11,709,973
Effective search space: 2822103493
Effective search space used: 2822103493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)