BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0485500 Os12g0485500|AK071132
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0485500  Similar to HesB/YadR/YfhF family protein            275   5e-75
Os01g0105800  Similar to Iron sulfur assembly protein 1           213   4e-56
AK111405                                                          118   1e-27
Os06g0146400  HesB/YadR/YfhF family protein                        82   1e-16
Os08g0369700  HesB/YadR/YfhF family protein                        66   8e-12

>Os12g0485500 Similar to HesB/YadR/YfhF family protein
          Length = 133

 Score =  275 bits (704), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MASSVFKAMAEKAGPSVRKQALTLTDAAASRVRQLLGVRQRAYLRLGVKARGCNGLSYTM 60
           MASSVFKAMAEKAGPSVRKQALTLTDAAASRVRQLLGVRQRAYLRLGVKARGCNGLSYTM
Sbjct: 1   MASSVFKAMAEKAGPSVRKQALTLTDAAASRVRQLLGVRQRAYLRLGVKARGCNGLSYTM 60

Query: 61  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCG 120
           NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCG
Sbjct: 61  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCG 120

Query: 121 ESFMTSTKNKGPA 133
           ESFMTSTKNKGPA
Sbjct: 121 ESFMTSTKNKGPA 133



>Os01g0105800 Similar to Iron sulfur assembly protein 1
          Length = 138

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 108/114 (94%), Gaps = 1/114 (0%)

Query: 18  RKQALTLTDAAASRVRQLLGVRQRAYLRLGVKARGCNGLSYTMNYADEKGKFDELVEDKG 77
           +KQAL LTDAAASR+RQLL +R R YLRLGVKARGCNGLSYT+NYADEKGKFDE+VEDKG
Sbjct: 23  QKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVVEDKG 82

Query: 78  VKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCGESFMTSTKNKG 131
           VK+LIDPKALMHVIGTKMD++DDPLRSEFVF+NPNSKGECGCGESFMT T +KG
Sbjct: 83  VKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMT-TSSKG 135



>AK111405 
          Length = 155

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 19  KQALTLTDAAASRVRQLLGVR-QRAYLRLGVKARGCNGLSYTMNYADEKGKFDELVEDKG 77
           + ALTLT +A ++++QLL  + +   +++GV+ RGCNGLSYT+ Y   KG  DE V   G
Sbjct: 48  RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQDG 107

Query: 78  VKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCGESF 123
           V++ I+ KA + ++GT+MD+++D L SEFVF NPN KG CGCGESF
Sbjct: 108 VRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 153



>Os06g0146400 HesB/YadR/YfhF family protein
          Length = 186

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 21  ALTLTDAAASRVRQLLGVRQRAY-LRLGVKARGCNGLSYTMNYADEKGKF--DELVEDKG 77
           A++LT+ A   + ++   R     LR+GV+  GC+G+SYTM + D       D +VE  G
Sbjct: 66  AISLTEKALKHLNKMRAERNEDLCLRIGVRQGGCSGMSYTMEFEDRSNASPDDSVVEYDG 125

Query: 78  VKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCGESFMTSTKNKGPA 133
             I+ DPK+L+ + G ++D+ D  +   F F NPN+   CGCG+SF T  + +  A
Sbjct: 126 FAIVCDPKSLLFMFGMELDYSDALIGGGFAFQNPNATKTCGCGKSFATGKETESTA 181



>Os08g0369700 HesB/YadR/YfhF family protein
          Length = 166

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 11  EKAGPS--VRKQALTLTDAAASRVRQLLGVRQRA---YLRLGVKARGCNGLSYTMNYADE 65
           E+A P        + +TD    R+++L      +    LRL V+A GC+G  Y+ +  D+
Sbjct: 45  ERASPPSPADPDTVHMTDGCIRRLKELHAKEPPSEGKMLRLSVEAGGCSGFQYSFSLDDK 104

Query: 66  KGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVF-MNPNSKGECGCGESFM 124
           K   D + E +GVK+++D  +   V G  +D+ ++ +RS FV   NP++ G C C  SFM
Sbjct: 105 KNSDDRIFEKEGVKLVVDDVSYDFVKGATVDYEEELIRSAFVVSTNPSAVGGCSCKSSFM 164

Query: 125 TS 126
            +
Sbjct: 165 VN 166



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,162,051
Number of extensions: 153930
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 5
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)